Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 8.9e-102 373.6 191 100.0
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.0e-81 307.0 168 96.4
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.9e-80 302.8 171 94.2
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 2.5e-80 302.4 168 94.6
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 4.3e-80 301.6 166 95.8
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 4.3e-80 301.6 166 95.8
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 4.3e-80 301.6 166 95.8
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 4.3e-80 301.6 166 95.8
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 4.3e-80 301.6 166 95.8
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 7.3e-80 300.8 166 95.8
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.6e-79 299.7 166 95.2
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.6e-79 298.5 166 94.6
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 5.2e-78 294.7 167 93.4
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.0e-74 281.2 166 87.3
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 3.0e-73 278.9 167 89.8
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.3e-65 252.7 166 80.1
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 4.8e-63 245.0 161 78.9
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.4e-62 243.4 159 78.0
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.4e-62 242.7 166 75.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 6.9e-62 241.1 166 74.1
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 3.4e-61 238.8 158 76.6
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 4.5e-61 238.4 163 73.6
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 5.8e-61 238.0 162 74.1
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 7.6e-61 237.7 162 73.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 7.6e-61 237.7 159 74.2
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 9.9e-61 237.3 159 76.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 9.9e-61 237.3 162 74.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.3e-60 236.9 162 74.7
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.7e-60 236.5 166 72.9
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.7e-60 236.5 167 73.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.7e-60 236.5 159 74.2
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 2.2e-60 236.1 163 73.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 2.2e-60 236.1 166 74.1
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.2e-60 236.1 163 74.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.8e-60 235.3 163 73.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 3.8e-60 235.3 159 74.8
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.4e-60 234.6 159 75.5
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 6.4e-60 234.6 160 74.4
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 8.4e-60 234.2 190 64.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.9e-59 233.0 166 72.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.9e-59 233.0 162 74.7
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.4e-59 232.6 166 71.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.4e-59 232.6 155 76.1
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.4e-59 232.6 166 72.3
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 5.5e-59 231.5 166 72.3
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 7.1e-59 231.1 158 74.7
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.1e-59 231.1 166 69.9
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.1e-59 231.1 166 69.9
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 7.1e-59 231.1 158 77.2
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 9.3e-59 230.7 166 69.9
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 2.1e-58 229.6 163 71.8
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.7e-58 229.2 166 73.5
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.7e-58 229.2 159 74.8
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 7.9e-58 227.6 159 74.2
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.3e-57 226.9 159 72.3
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.8e-57 226.5 165 70.9
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 2.3e-57 226.1 159 72.3
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 3.0e-57 225.7 165 70.3
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 3.0e-57 225.7 165 70.3
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 3.0e-57 225.7 155 74.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 3.0e-57 225.7 155 74.8
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.0e-57 225.7 155 74.8
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.9e-57 225.3 155 74.8
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 5.1e-57 224.9 154 72.1
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 5.1e-57 224.9 181 65.7
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 6.7e-57 224.6 158 72.2
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 8.7e-57 224.2 155 74.2
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.5e-56 223.4 155 73.5
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 5.6e-56 221.5 159 73.0
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 9.6e-56 220.7 154 72.1
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 9.6e-56 220.7 157 70.7
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.6e-55 219.9 165 69.7
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 2.1e-55 219.5 156 73.1
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.8e-55 219.2 159 69.8
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.8e-55 218.4 159 69.8
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.8e-55 218.4 167 68.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 4.8e-55 218.4 159 68.6
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 6.2e-55 218.0 160 70.6
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 6.2e-55 218.0 159 69.8
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 6.2e-55 218.0 160 71.9
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-54 217.2 159 69.2
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 3.1e-54 215.7 160 70.0
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.1e-54 215.7 166 70.5
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 4.0e-54 215.3 158 68.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.5e-53 213.4 166 66.3
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.4e-53 212.2 168 65.5
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.6e-53 211.1 160 67.5
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.7e-52 209.9 158 65.8
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.9e-52 209.1 159 68.6
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.8e-52 208.8 158 65.8
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.9e-52 208.4 168 64.9
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 1.9e-51 206.5 168 64.9
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.6e-50 203.4 166 66.9
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.6e-50 203.4 155 67.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 6.0e-50 201.4 161 68.3
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.0e-49 200.7 158 65.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.3e-49 200.3 159 66.0
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.8e-49 199.9 156 67.3
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.1e-48 197.2 155 64.5
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.5e-48 196.8 199 53.8
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.5e-48 196.8 165 63.0
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.9e-48 196.4 125 78.4
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.3e-47 193.7 163 62.6
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.6e-47 193.4 168 62.5
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.8e-47 192.6 156 62.8
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 4.8e-47 191.8 184 59.2
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.2e-47 191.0 168 58.3
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.8e-46 189.9 137 68.6
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.5e-45 186.8 137 68.6
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 3.8e-44 182.2 161 59.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.5e-44 181.4 159 62.9
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 2.5e-43 179.5 159 60.4
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 4.2e-43 178.7 171 59.1
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 5.5e-43 178.3 170 60.0
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 9.3e-43 177.6 163 63.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.7e-42 176.0 109 77.1
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 2.7e-42 176.0 109 77.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 7.9e-42 174.5 108 76.9
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.0e-41 174.1 166 59.6
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 4.3e-40 168.7 157 58.6
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 9.7e-40 167.5 108 73.1
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 3.7e-39 165.6 216 47.7
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.0e-37 159.8 162 53.1
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 5.0e-36 155.2 159 50.9
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.9e-35 153.3 109 67.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 4.2e-35 152.1 114 67.5
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 5.5e-35 151.8 156 48.7
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 9.4e-35 151.0 159 49.1
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 9.7e-32 141.0 157 45.9
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.7e-31 140.2 90 73.3
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.2e-31 139.8 157 54.8
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.1e-30 137.5 169 40.8
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 6.9e-30 134.8 95 75.8
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 2.2e-28 129.8 64 98.4
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.1e-27 127.5 64 95.3
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 2.6e-21 106.3 88 51.1
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.3e-12 77.4 43 86.0
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.1e-06 56.2 96 38.5


User provided reference genes

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