Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 5.0e-179 630.9 309 100.0
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.9e-146 522.7 299 87.0
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 6.2e-145 517.7 302 85.8
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.8e-144 516.2 308 85.1
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.7e-142 509.6 307 83.1
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.7e-139 499.6 298 82.2
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 4.9e-134 481.5 302 80.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.6e-132 476.5 298 79.5
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 5.1e-131 471.5 298 78.2
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 4.7e-129 464.9 312 75.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 6.2e-129 464.5 309 76.4
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 6.2e-129 464.5 309 76.4
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 3.5e-124 448.7 303 71.6
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.9e-102 375.9 302 63.2
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.1e-101 374.0 295 63.4
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.9e-101 373.2 301 63.5
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 3.2e-101 372.5 301 63.5
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.6e-100 370.2 303 61.1
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 3.5e-100 369.0 294 63.3
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 3.5e-100 369.0 302 62.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 2.3e-99 366.3 300 61.3
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 5.1e-99 365.2 295 62.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 6.7e-99 364.8 306 60.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.1e-98 364.0 301 61.8
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 3.3e-98 362.5 295 63.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 4.3e-98 362.1 302 62.3
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 7.4e-98 361.3 300 61.3
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.6e-97 360.1 300 61.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.1e-97 359.8 305 60.7
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.8e-97 358.6 296 60.5
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.4e-96 357.1 304 59.9
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-96 356.3 286 62.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.4e-96 356.3 286 62.2
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 6.9e-96 354.8 301 60.8
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.2e-95 354.0 286 63.6
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.2e-95 354.0 294 61.2
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 2.0e-95 353.2 294 58.8
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.6e-95 352.8 294 59.2
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 7.6e-95 351.3 308 59.1
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 7.6e-95 351.3 298 60.1
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 3.8e-94 349.0 321 57.3
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 8.4e-94 347.8 302 59.3
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.1e-93 347.4 298 59.4
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 3.2e-93 345.9 297 59.6
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 3.2e-93 345.9 299 58.9
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 5.5e-93 345.1 296 58.8
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 5.5e-93 345.1 299 59.5
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 9.3e-93 344.4 295 57.6
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.2e-92 344.0 298 59.4
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.1e-92 343.2 299 57.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.7e-92 342.8 278 64.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 4.6e-92 342.0 298 59.1
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 6.7e-91 338.2 310 57.7
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 6.7e-91 338.2 299 59.5
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.5e-90 337.0 271 62.4
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.3e-90 335.9 311 56.9
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 7.4e-90 334.7 300 62.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 3.7e-89 332.4 253 66.4
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.8e-89 332.0 295 56.6
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.4e-88 330.5 301 54.2
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 3.1e-88 329.3 305 53.4
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 4.5e-87 325.5 272 61.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.5e-87 325.5 277 59.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.0e-86 324.3 272 57.4
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.9e-86 322.8 294 56.5
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.5e-86 321.6 294 55.4
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 6.5e-86 321.6 278 59.7
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 6.5e-86 321.6 357 50.4
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 8.5e-86 321.2 301 56.5
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 4.2e-85 318.9 290 57.6
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.2e-84 317.4 283 57.6
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.6e-84 317.0 243 64.2
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 6.1e-84 315.1 272 57.7
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 7.9e-84 314.7 354 50.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 7.9e-84 314.7 354 50.0
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.8e-83 313.5 332 52.4
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.7e-81 307.0 298 53.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 2.8e-81 306.2 301 55.8
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.8e-81 306.2 272 57.7
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 8.2e-81 304.7 334 50.0
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.5e-79 298.9 302 52.3
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.5e-79 298.9 309 52.8
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.5e-79 298.9 309 52.8
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.9e-78 296.2 233 64.4
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 7.2e-77 291.6 294 53.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.4e-75 287.3 269 53.9
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 6.7e-75 285.0 302 52.3
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 4.1e-72 275.8 314 49.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 5.9e-71 271.9 300 48.0
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.2e-70 270.0 229 63.3
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.9e-69 266.9 242 58.3
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 4.2e-69 265.8 230 59.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 8.0e-68 261.5 225 60.0
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 8.0e-68 261.5 175 71.4
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 8.0e-68 261.5 292 46.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.0e-67 261.2 297 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 5.2e-67 258.8 300 48.3
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.7e-67 258.5 280 50.7
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 5.7e-66 255.4 224 56.7
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 9.7e-66 254.6 237 55.3
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.1e-64 251.1 179 67.0
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 4.1e-64 249.2 221 58.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 7.0e-64 248.4 227 57.7
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 5.9e-63 245.4 293 47.1
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 3.8e-62 242.7 210 57.1
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-60 237.7 297 44.4
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-59 234.2 306 42.5
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.8e-54 216.1 150 66.7
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.6e-52 210.7 258 46.9
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.4e-50 203.0 143 65.7
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 3.7e-49 199.5 269 41.3
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.4e-48 197.6 163 57.7
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 4.1e-48 196.1 180 58.3
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.5e-47 193.0 304 43.1
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 2.0e-42 177.2 184 54.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 2.4e-40 170.2 116 71.6
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 5.0e-38 162.5 220 45.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.0e-35 154.8 113 64.6
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.7e-33 146.4 141 56.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 3.0e-30 136.7 98 66.3
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.5e-29 134.4 145 49.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.1e-23 114.0 164 41.5
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 2.0e-18 97.4 61 73.8
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 9.9e-18 95.1 73 60.3
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-17 94.4 73 63.0
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.4e-16 89.4 103 49.5
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 9.6e-13 78.6 80 52.5
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.9e-09 67.0 66 47.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-08 65.1 96 45.8
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 4.2e-08 63.2 88 44.3


User provided reference genes

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