Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.5e-81 306.2 162 100.0
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.5e-65 252.3 161 82.0
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.9e-63 244.2 161 80.1
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.5e-60 235.7 159 79.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-58 229.9 158 78.5
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.3e-58 229.9 161 75.2
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 6.7e-58 227.6 161 76.4
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 6.7e-58 227.6 161 76.4
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-57 226.5 161 75.8
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.5e-57 226.5 161 75.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 2.5e-57 225.7 157 80.9
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 5.7e-57 224.6 161 75.2
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-26 124.0 107 65.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.7e-24 115.5 170 46.5
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 4.8e-24 115.2 172 44.2
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 6.3e-24 114.8 172 46.5
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 9.1e-23 110.9 184 42.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.2e-21 106.3 186 41.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.2e-21 106.3 189 39.2
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.9e-21 105.9 159 44.0
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.8e-21 105.5 159 44.0
C03p14810 Brassica napus HOM05D004507 ORTHO05D004874 5.0e-21 105.1 93 65.6
BolC3t13923H Brassica oleracea HOM05D004507 ORTHO05D004874 5.0e-21 105.1 93 65.6
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 6.5e-21 104.8 179 42.5
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 6.5e-21 104.8 185 39.5
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 8.5e-21 104.4 180 43.3
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 8.5e-21 104.4 180 40.6
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.5e-20 103.6 182 39.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.5e-20 102.8 182 39.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.5e-20 102.8 187 40.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 4.2e-20 102.1 182 39.6
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 4.2e-20 102.1 182 39.6
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 7.2e-20 101.3 188 37.2
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 9.4e-20 100.9 186 38.7
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 9.4e-20 100.9 184 38.0
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 9.4e-20 100.9 179 37.4
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 9.4e-20 100.9 176 41.5
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.6e-19 100.1 172 36.6
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.6e-19 100.1 180 39.4
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.1e-19 99.8 159 44.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.1e-19 99.8 187 39.0
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.7e-19 99.4 177 39.5
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 6.1e-19 98.2 178 39.3
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.1e-19 98.2 181 42.0
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 6.1e-19 98.2 185 40.0
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 8.0e-19 97.8 194 41.8
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 8.0e-19 97.8 173 41.0
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 8.0e-19 97.8 176 40.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.0e-18 97.4 180 40.6
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.4e-18 97.1 183 39.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.8e-18 96.7 171 36.8
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-18 96.7 173 40.5
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.3e-18 96.3 171 36.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.3e-18 96.3 171 36.3
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 2.3e-18 96.3 193 36.8
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 2.3e-18 96.3 159 38.4
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 3.0e-18 95.9 163 38.0
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 3.0e-18 95.9 181 37.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.0e-18 95.5 172 34.9
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.0e-18 95.5 183 38.8
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.0e-18 95.5 180 38.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 5.2e-18 95.1 171 36.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 5.2e-18 95.1 171 36.3
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.8e-18 94.7 172 34.9
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 6.8e-18 94.7 171 36.3
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 6.8e-18 94.7 182 39.6
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.2e-17 94.0 178 34.8
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.2e-17 94.0 172 34.3
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-17 94.0 176 38.1
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.2e-17 94.0 188 38.3
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.2e-17 94.0 180 38.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.5e-17 93.6 191 37.2
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.5e-17 93.6 172 37.8
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.5e-17 93.6 175 38.9
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.5e-17 93.6 169 39.6
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 2.0e-17 93.2 168 38.7
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 2.0e-17 93.2 171 35.7
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.0e-17 93.2 183 37.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.0e-17 93.2 178 37.1
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 2.6e-17 92.8 177 40.1
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 2.6e-17 92.8 171 35.1
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 2.6e-17 92.8 171 35.1
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.6e-17 92.8 192 36.5
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 4.4e-17 92.0 172 33.1
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.4e-17 92.0 168 37.5
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.4e-17 92.0 175 38.3
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 4.4e-17 92.0 177 37.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.4e-17 92.0 178 37.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 5.7e-17 91.7 187 38.5
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 7.5e-17 91.3 172 39.5
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 7.5e-17 91.3 171 35.7
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 7.5e-17 91.3 171 35.7
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 7.5e-17 91.3 191 36.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 7.5e-17 91.3 182 39.0
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 7.5e-17 91.3 188 36.2
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 9.8e-17 90.9 171 34.5
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 9.8e-17 90.9 171 34.5
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 9.8e-17 90.9 175 39.4
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.3e-16 90.5 179 38.0
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.3e-16 90.5 174 37.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.3e-16 90.5 176 38.1
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.7e-16 90.1 171 34.5
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.7e-16 90.1 185 35.7
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.7e-16 90.1 185 36.2
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.8e-16 89.4 207 34.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.7e-16 89.0 177 39.0
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 4.8e-16 88.6 171 34.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.3e-16 88.2 172 36.6
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.8e-15 86.7 188 37.2
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.1e-15 85.5 174 32.8
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 5.4e-15 85.1 160 43.1
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 5.4e-15 85.1 169 33.1
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.2e-14 84.0 180 36.1
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.2e-14 84.0 188 34.6
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.6e-14 83.6 179 34.1
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 2.0e-14 83.2 181 35.9
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.0e-14 83.2 178 36.5
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.5e-14 82.4 163 37.4
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.5e-14 82.0 194 36.1
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 5.9e-14 81.6 163 37.4
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.9e-14 81.6 143 40.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 1.7e-13 80.1 177 35.0
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.2e-13 79.7 180 38.9
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.2e-13 79.7 178 34.8
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.2e-13 79.7 179 33.0
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 2.9e-13 79.3 190 33.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.8e-13 79.0 144 41.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 8.5e-13 77.8 190 31.6
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.1e-12 77.4 182 34.1
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-12 77.0 164 32.9
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.5e-12 77.0 162 32.1
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 7.2e-12 74.7 188 31.4
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 9.5e-12 74.3 157 35.7
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.0e-10 70.9 157 33.1
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.4e-10 70.5 156 36.5
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.4e-10 70.5 160 36.2
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.3e-10 69.7 144 39.6
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.3e-10 69.7 154 35.7
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 5.2e-10 68.6 152 34.2
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 6.8e-10 68.2 132 37.1
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 8.8e-10 67.8 149 36.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.2e-09 67.4 161 34.8
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 3.4e-09 65.9 137 37.2
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 3.4e-09 65.9 157 35.0
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 7.5e-09 64.7 174 33.3
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 8.3e-08 61.2 88 42.0
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.1e-07 60.8 46 67.4
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.1e-07 60.8 66 51.5
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 1.8e-07 60.1 58 56.9
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.1e-07 59.3 139 33.1
SMO144G0179 Selaginella moellendorffii HOM05D026704 ORTHO05D030102 3.5e-06 55.8 133 35.3


User provided reference genes

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