Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR270970 Cardamine hirsuta HOM05D003811 ORTHO05D004470 1.1e-191 673.3 377 100.0
AL8G33110 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 5.8e-129 464.9 385 76.9
AT5G57180 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 5.1e-125 451.8 383 75.5
Sp6g18910 Schrenkiella parvula HOM05D003811 ORTHO05D004470 9.3e-119 431.0 395 68.4
Thhalv10013517m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 1.2e-113 414.1 398 66.3
Carub.0008s1769 Capsella rubella HOM05D003811 ORTHO05D004470 7.1e-103 378.3 391 66.2
Aa31LG3G13080 Aethionema arabicum HOM05D003811 ORTHO05D004470 9.0e-98 361.3 414 60.4
BcaB08g36076 Brassica carinata HOM05D003811 ORTHO05D004470 5.7e-92 342.0 389 64.5
BcaB05g22326 Brassica carinata HOM05D003811 ORTHO05D004470 9.0e-90 334.7 394 58.6
BolC9t57752H Brassica oleracea HOM05D003811 ORTHO05D004470 1.2e-89 334.3 350 61.4
C09p49010 Brassica napus HOM05D003811 ORTHO05D004470 2.5e-87 326.6 349 61.6
BcaC04g19992 Brassica carinata HOM05D003811 ORTHO05D004470 1.3e-85 320.9 349 61.3
A10p14570 Brassica napus HOM05D003811 ORTHO05D004470 5.9e-81 305.4 350 59.1
A02p08670 Brassica napus HOM05D003811 ORTHO05D004470 1.3e-80 304.3 386 57.3
BraA02t05937Z Brassica rapa HOM05D003811 ORTHO05D004470 1.3e-80 304.3 386 57.3
BraA10t43544Z Brassica rapa HOM05D003811 ORTHO05D004470 1.1e-79 301.2 350 58.6
BcaC03g14176 Brassica carinata HOM05D003811 ORTHO05D004470 1.3e-75 287.7 384 56.8
C02p14510 Brassica napus HOM05D003811 ORTHO05D004470 1.3e-75 287.7 384 56.8
BolC2t07575H Brassica oleracea HOM05D003811 ORTHO05D004470 1.3e-75 287.7 384 56.8
AL7G27010 Arabidopsis lyrata HOM05D003811 ORTHO05D004470 4.4e-68 262.7 376 49.2
Thhalv10025322m.g Eutrema salsugineum HOM05D003811 ORTHO05D004470 5.7e-68 262.3 386 48.2
C01p21610 Brassica napus HOM05D003811 ORTHO05D004470 9.1e-66 255.0 379 46.4
BolC1t02080H Brassica oleracea HOM05D003811 ORTHO05D004470 9.1e-66 255.0 379 46.4
BcaC09g50723 Brassica carinata HOM05D003811 ORTHO05D004470 7.7e-65 251.9 379 46.2
AT4G25990 Arabidopsis thaliana HOM05D003811 ORTHO05D004470 2.9e-64 250.0 366 49.5
Carub.0007s1496 Capsella rubella HOM05D003811 ORTHO05D004470 4.4e-60 236.1 386 47.9
Sp7g24010 Schrenkiella parvula HOM05D003811 ORTHO05D004470 7.5e-60 235.3 394 47.7
A01p17250 Brassica napus HOM05D003811 ORTHO05D004470 6.3e-59 232.3 379 47.0
BraA01t01681Z Brassica rapa HOM05D003811 ORTHO05D004470 8.2e-59 231.9 379 47.0
BolC7t45947H Brassica oleracea HOM05D003811 ORTHO05D004470 1.3e-56 224.6 390 45.9
BraA03t14705Z Brassica rapa HOM05D003811 ORTHO05D004470 6.5e-56 222.2 387 45.2
BcaC06g32778 Brassica carinata HOM05D003811 ORTHO05D004470 8.5e-56 221.9 387 47.5
C07p54590 Brassica napus HOM05D003811 ORTHO05D004470 1.1e-55 221.5 390 45.6
BcaNung03775 Brassica carinata HOM05D003811 ORTHO05D004470 1.6e-54 217.6 378 45.0
CARHR233500 Cardamine hirsuta HOM05D003811 ORTHO05D004470 2.3e-53 213.8 346 47.1
Manes.06G019300 Manihot esculenta HOM05D003811 ORTHO05D004470 4.0e-45 186.4 391 40.7
DCAR_018030 Daucus carota HOM05D003811 ORTHO05D004470 2.0e-44 184.1 390 39.5
Cfa013454 Carpinus fangiana HOM05D003811 ORTHO05D004470 1.7e-43 181.0 402 38.8
CiPaw.07G197300 Carya illinoinensis HOM05D003811 ORTHO05D004470 2.8e-43 180.3 397 37.8
Sabra18G0116100 Salix brachista HOM05D003811 ORTHO05D004470 3.7e-43 179.9 409 41.8
RcHm_v2.0_Chr4g0399481 Rosa chinensis HOM05D003811 ORTHO05D004470 1.1e-42 178.3 401 38.2
Duzib168G0111 Durio zibethinus HOM05D003811 ORTHO05D004470 1.8e-42 177.6 406 39.2
Ca_27932_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 2.4e-42 177.2 389 36.8
FAN22G1182 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.4e-42 177.2 398 37.9
vmacro05996 Vaccinium macrocarpon HOM05D003811 ORTHO05D004470 3.1e-42 176.8 387 38.2
FAN17G0360 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.6e-41 174.5 393 36.9
Atru.chr7.754 Acer truncatum HOM05D003811 ORTHO05D004470 2.0e-41 174.1 384 39.1
Atru.chr7.775 Acer truncatum HOM05D003811 ORTHO05D004470 2.0e-41 174.1 384 39.1
arahy.Tifrunner.gnm1.ann1.YRC4PH Arachis hypogaea HOM05D003811 ORTHO05D004470 7.8e-41 172.2 396 36.9
A03p56350 Brassica napus HOM05D003811 ORTHO05D004470 7.8e-41 172.2 383 39.4
FvH4_4g07270 Fragaria vesca HOM05D003811 ORTHO05D004470 7.8e-41 172.2 407 36.6
arahy.Tifrunner.gnm1.ann1.0QJD35 Arachis hypogaea HOM05D003811 ORTHO05D004470 1.3e-40 171.4 396 36.9
MD13G1239300 Malus domestica HOM05D003811 ORTHO05D004470 2.3e-40 170.6 408 37.5
MD16G1248400 Malus domestica HOM05D003811 ORTHO05D004470 2.3e-40 170.6 405 37.5
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.5e-39 167.9 407 36.4
Psat4g013600 Pisum sativum HOM05D003811 ORTHO05D004470 3.3e-39 166.8 390 37.2
Sopen07g004460 Solanum pennellii HOM05D003811 ORTHO05D004470 3.3e-39 166.8 413 35.4
TAR620G0001 Trochodendron aralioides HOM05D003811 ORTHO05D004470 3.3e-39 166.8 387 38.5
Peaxi162Scf01038g00011 Petunia axillaris HOM05D003811 ORTHO05D004470 7.3e-39 165.6 399 36.6
PGSC0003DMG400022983 Solanum tuberosum HOM05D003811 ORTHO05D004470 3.6e-38 163.3 409 35.9
Sc10g0001710 Simmondsia chinensis HOM05D003811 ORTHO05D004470 4.7e-38 162.9 378 36.8
Solyc07g008540.3 Solanum lycopersicum HOM05D003811 ORTHO05D004470 4.7e-38 162.9 414 35.7
Manes.14G159300 Manihot esculenta HOM05D003811 ORTHO05D004470 6.1e-38 162.5 386 37.6
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 8.0e-38 162.2 401 36.4
Nitab4.5_0000949g0020 Nicotiana tabacum HOM05D003811 ORTHO05D004470 1.0e-37 161.8 407 35.6
Hund13780 Selenicereus undatus HOM05D003811 ORTHO05D004470 1.0e-37 161.8 399 34.6
Ciclev10008308m.g Citrus clementina HOM05D003811 ORTHO05D004470 1.4e-37 161.4 405 37.0
CAN.G192.5 Capsicum annuum HOM05D003811 ORTHO05D004470 8.9e-37 158.7 403 35.2
DCAR_014667 Daucus carota HOM05D003811 ORTHO05D004470 8.9e-37 158.7 375 37.3
Cc06_g20840 Coffea canephora HOM05D003811 ORTHO05D004470 1.2e-36 158.3 405 34.3
Nitab4.5_0000491g0080 Nicotiana tabacum HOM05D003811 ORTHO05D004470 2.0e-36 157.5 400 35.8
Dinv25445 Davidia involucrata HOM05D003811 ORTHO05D004470 2.6e-36 157.1 402 36.1
ClCG11G011760 Citrullus lanatus HOM05D003811 ORTHO05D004470 3.4e-36 156.8 396 35.6
Eucgr.C00112 Eucalyptus grandis HOM05D003811 ORTHO05D004470 3.4e-36 156.8 400 37.0
Potri.018G142100 Populus trichocarpa HOM05D003811 ORTHO05D004470 4.4e-36 156.4 423 38.3
Cpa.g.sc95.8 Carica papaya HOM05D003811 ORTHO05D004470 4.9e-35 152.9 403 36.2
Oeu006847.1 Olea europaea HOM05D003811 ORTHO05D004470 6.4e-35 152.5 396 34.6
MELO3C003975.2 Cucumis melo HOM05D003811 ORTHO05D004470 1.1e-34 151.8 412 35.2
Thecc.09G186300 Theobroma cacao HOM05D003811 ORTHO05D004470 1.1e-34 151.8 416 34.6
CSS0000053 Camellia sinensis var. sinensis HOM05D003811 ORTHO05D004470 1.4e-34 151.4 383 36.6
FAN02G0923 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.4e-34 150.6 394 36.3
Lj5C615T3 Lonicera japonica HOM05D003811 ORTHO05D004470 2.4e-34 150.6 401 32.9
Rhsim03G0266200 Rhododendron simsii HOM05D003811 ORTHO05D004470 2.4e-34 150.6 399 35.3
Nitab4.5_0000949g0010 Nicotiana tabacum HOM05D003811 ORTHO05D004470 3.2e-34 150.2 406 33.7
Aqoxy7G02811 Aquilegia oxysepala HOM05D003811 ORTHO05D004470 4.1e-34 149.8 399 34.3
Potri.006G075200 Populus trichocarpa HOM05D003811 ORTHO05D004470 4.1e-34 149.8 419 39.1
CsaV3_2G008720 Cucumis sativus L. HOM05D003811 ORTHO05D004470 5.4e-34 149.4 401 33.9
Migut.L01879 Erythranthe guttata HOM05D003811 ORTHO05D004470 5.4e-34 149.4 384 34.4
Sed0004951 Sechium edule HOM05D003811 ORTHO05D004470 7.0e-34 149.1 402 36.3
Duzib150G1212 Durio zibethinus HOM05D003811 ORTHO05D004470 9.2e-34 148.7 408 34.8
Lalb_Chr13g0299991 Lupinus albus HOM05D003811 ORTHO05D004470 1.2e-33 148.3 380 36.1
Sed0025374 Sechium edule HOM05D003811 ORTHO05D004470 1.2e-33 148.3 387 35.9
Sabra06G0055900 Salix brachista HOM05D003811 ORTHO05D004470 2.0e-33 147.5 411 37.2
Lj4g0014027 Lotus japonicus HOM05D003811 ORTHO05D004470 5.9e-33 146.0 390 37.7
Medtr4g127420 Medicago truncatula HOM05D003811 ORTHO05D004470 7.8e-33 145.6 388 34.8
Lsat_1_v5_gn_7_56240 Lactuca sativa HOM05D003811 ORTHO05D004470 1.3e-32 144.8 394 35.0
Oeu018819.1 Olea europaea HOM05D003811 ORTHO05D004470 3.0e-32 143.7 391 34.3
Ah.10g036890 Amaranthus hybridus HOM05D003811 ORTHO05D004470 3.9e-32 143.3 390 37.4
Lalb_Chr07g0180651 Lupinus albus HOM05D003811 ORTHO05D004470 3.9e-32 143.3 382 37.2
Lalb_Chr12g0199621 Lupinus albus HOM05D003811 ORTHO05D004470 8.6e-32 142.1 349 36.7
Oeu034800.1 Olea europaea HOM05D003811 ORTHO05D004470 8.6e-32 142.1 387 34.6
TWI63G0214 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 8.6e-32 142.1 375 36.5
Rhsim01G0116800 Rhododendron simsii HOM05D003811 ORTHO05D004470 1.1e-31 141.7 394 33.5
Hund16072 Selenicereus undatus HOM05D003811 ORTHO05D004470 1.9e-31 141.0 411 34.5
Dinv41179 Davidia involucrata HOM05D003811 ORTHO05D004470 3.3e-31 140.2 391 33.8
Lj5C612T1 Lonicera japonica HOM05D003811 ORTHO05D004470 3.3e-31 140.2 389 33.2
MBI16_g05834_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 4.3e-31 139.8 383 36.0
EL10Ac2g04726 Beta vulgaris HOM05D003811 ORTHO05D004470 7.3e-31 139.0 390 35.1
Prupe.1G074900 Prunus persica HOM05D003811 ORTHO05D004470 7.3e-31 139.0 390 34.6
QL02p046940 Quercus lobata HOM05D003811 ORTHO05D004470 9.5e-31 138.7 420 34.8
MSTRG.26548 Avicennia marina HOM05D003811 ORTHO05D004470 1.6e-30 137.9 396 33.3
AUR62040721 Chenopodium quinoa HOM05D003811 ORTHO05D004470 1.6e-30 137.9 387 35.7
AUR62012114 Chenopodium quinoa HOM05D003811 ORTHO05D004470 2.1e-30 137.5 387 35.7
SalBow5G0957 Salvia bowleyana HOM05D003811 ORTHO05D004470 2.1e-30 137.5 385 33.8
GSVIVG01010855001 Vitis vinifera HOM05D003811 ORTHO05D004470 2.8e-30 137.1 386 35.0
Glyma.17G059100 Glycine max HOM05D003811 ORTHO05D004470 4.7e-30 136.3 381 37.3
MBI13_g34046_MAGBIO Magnolia biondii HOM05D003811 ORTHO05D004470 4.7e-30 136.3 388 35.3
SalBow5G4432 Salvia bowleyana HOM05D003811 ORTHO05D004470 4.7e-30 136.3 387 34.1
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 4.7e-30 136.3 393 32.8
Migut.J00797 Erythranthe guttata HOM05D003811 ORTHO05D004470 6.2e-30 136.0 393 35.6
MSTRG.10438 Avicennia marina HOM05D003811 ORTHO05D004470 8.0e-30 135.6 387 32.3
Hma1.2p1_1326F.1_g275850 Hydrangea macrophylla HOM05D003811 ORTHO05D004470 1.8e-29 134.4 337 37.1
Lsat_1_v5_gn_8_69001 Lactuca sativa HOM05D003811 ORTHO05D004470 1.8e-29 134.4 355 33.2
TWI34G1601 Tripterygium wilfordii HOM05D003811 ORTHO05D004470 1.8e-29 134.4 380 32.1
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 4.0e-29 133.3 392 36.0
TPR.G32975 Trifolium pratense HOM05D003811 ORTHO05D004470 6.8e-29 132.5 393 34.1
Eucgr.C02219 Eucalyptus grandis HOM05D003811 ORTHO05D004470 1.2e-28 131.7 387 34.4
FvH4_6g24780 Fragaria vesca HOM05D003811 ORTHO05D004470 1.2e-28 131.7 418 33.5
PGR001G0001 Punica granatum HOM05D003811 ORTHO05D004470 2.0e-28 131.0 394 33.8
VMungo1215G0314 Vigna mungo HOM05D003811 ORTHO05D004470 2.0e-28 131.0 377 34.0
Nn8g40778 Nelumbo nucifera HOM05D003811 ORTHO05D004470 2.6e-28 130.6 387 33.6
Glyma.13G100700 Glycine max HOM05D003811 ORTHO05D004470 3.4e-28 130.2 394 33.5
Lsat_1_v5_gn_5_83141 Lactuca sativa HOM05D003811 ORTHO05D004470 7.5e-28 129.0 383 34.2
HanXRQChr03g0065501 Helianthus annuus HOM05D003811 ORTHO05D004470 1.3e-27 128.3 457 30.9
HanXRQChr09g0245431 Helianthus annuus HOM05D003811 ORTHO05D004470 3.7e-27 126.7 438 31.3
Oeu019552.1 Olea europaea HOM05D003811 ORTHO05D004470 6.4e-27 125.9 405 32.3
ECA240G2391 Erigeron canadensis HOM05D003811 ORTHO05D004470 5.4e-26 122.9 409 31.5
HanXRQChr10g0308851 Helianthus annuus HOM05D003811 ORTHO05D004470 1.7e-24 117.9 411 31.6
PSO063G0992 Papaver somniferum HOM05D003811 ORTHO05D004470 5.0e-24 116.3 387 33.6
PSO170G1122 Papaver somniferum HOM05D003811 ORTHO05D004470 6.6e-24 115.9 386 31.9
COL.COLO4_07099 Corchorus olitorius HOM05D003811 ORTHO05D004470 8.6e-24 115.5 334 34.4
Phvul.003G141200 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 1.5e-23 114.8 379 33.5
Gohir.A05G002200 Gossypium hirsutum HOM05D003811 ORTHO05D004470 9.5e-23 112.1 350 34.3
Gohir.D05G002600 Gossypium hirsutum HOM05D003811 ORTHO05D004470 1.6e-22 111.3 273 38.5
SGA_v2.0_scaffold31G12764 Striga asiatica HOM05D003811 ORTHO05D004470 3.6e-22 110.2 390 31.5
Psat1g144040 Pisum sativum HOM05D003811 ORTHO05D004470 4.7e-22 109.8 374 32.4
Glyma.15G166500 Glycine max HOM05D003811 ORTHO05D004470 2.3e-21 107.5 342 31.3
Gorai.009G002400 Gossypium raimondii HOM05D003811 ORTHO05D004470 4.0e-21 106.7 274 38.0
Medtr2g038010 Medicago truncatula HOM05D003811 ORTHO05D004470 2.0e-20 104.4 354 31.1
CDE06G2566 Ceratophyllum demersum HOM05D003811 ORTHO05D004470 7.5e-20 102.4 385 30.6
unitig_8.g4051 Utricularia gibba HOM05D003811 ORTHO05D004470 1.3e-19 101.7 290 33.4
HanXRQChr05g0141071 Helianthus annuus HOM05D003811 ORTHO05D004470 3.7e-19 100.1 338 30.8
HPP92_017127 Vanilla planifolia HOM05D003811 ORTHO05D004470 1.4e-18 98.2 356 31.2
Glyma.09G059800 Glycine max HOM05D003811 ORTHO05D004470 2.1e-17 94.4 336 31.5
Actinidia38496 Actinidia chinensis HOM05D003811 ORTHO05D004470 2.3e-16 90.9 214 37.4
HPP92_010287 Vanilla planifolia HOM05D003811 ORTHO05D004470 6.6e-16 89.4 388 32.5
TPR.G7568 Trifolium pratense HOM05D002228 ORTHO05D002347 2.8e-14 84.0 180 38.9
CiPaw.08G032400 Carya illinoinensis HOM05D003811 ORTHO05D004470 4.7e-14 83.2 338 30.5
FAN05G4809 Fragaria x ananassa HOM05D003811 ORTHO05D004470 4.7e-14 83.2 221 33.0
ECA234G4485 Erigeron canadensis HOM05D003811 ORTHO05D004470 2.3e-13 80.9 246 32.5
unitig_22.g5159 Utricularia gibba HOM05D003811 ORTHO05D004470 5.2e-13 79.7 168 38.7
Ca_02108_v3 Cicer arietinum L. HOM05D003811 ORTHO05D004470 6.8e-13 79.3 338 30.2
SGA_v2.0_scaffold511G52626 Striga asiatica HOM05D003811 ORTHO05D004470 9.9e-12 75.5 338 27.2
ECA236G3708 Erigeron canadensis HOM05D003811 ORTHO05D004470 2.2e-11 74.3 311 27.0
FAN05G5342 Fragaria x ananassa HOM05D003811 ORTHO05D004470 8.4e-11 72.4 121 44.6
SGA_v2.0_scaffold112G31580 Striga asiatica HOM05D003811 ORTHO05D004470 8.4e-11 72.4 217 34.6
ATR0626G357 Amborella trichopoda HOM05D003811 ORTHO05D004470 1.1e-10 72.0 234 33.3
Os02g0148000 Oryza sativa ssp. japonica HOM05D003811 ORTHO05D004470 3.2e-10 70.5 383 29.5
Oeu064847.1 Olea europaea HOM05D003811 ORTHO05D004470 4.1e-10 70.1 50 72.0
Zm00001eb226810 Zea mays HOM05D018649 ORTHO05D004470 1.2e-09 68.6 364 27.7
Phvul.009G236100 Phaseolus vulgaris HOM05D003811 ORTHO05D004470 2.1e-09 67.8 157 36.3
Actinidia29953 Actinidia chinensis HOM05D003811 ORTHO05D004470 3.3e-07 60.5 138 34.8
Zm00001eb272980 Zea mays HOM05D018649 ORTHO05D004470 4.3e-07 60.1 355 26.8


User provided reference genes

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