Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 4.7e-258 894.0 456 100.0
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.1e-243 846.3 459 94.1
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.5e-240 835.9 460 92.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-239 832.4 459 92.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 4.9e-239 830.9 460 92.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.4e-238 829.3 459 92.2
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 2.4e-238 828.6 456 92.3
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.5e-237 824.7 459 91.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.5e-237 824.3 459 91.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 7.7e-237 823.5 454 92.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 7.7e-237 823.5 460 91.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.6e-236 820.1 459 91.5
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 7.3e-235 817.0 460 90.9
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.2e-231 805.4 460 90.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.1e-230 803.1 450 90.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.2e-226 789.6 462 88.7
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 9.5e-219 763.5 459 83.2
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 4.4e-208 728.0 386 94.0
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 5.8e-208 727.6 381 95.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 4.9e-199 698.0 451 77.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 9.3e-198 693.7 453 77.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 5.1e-196 688.0 454 75.3
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 6.2e-194 681.0 433 78.8
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.8e-193 679.5 450 74.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 5.3e-193 677.9 452 75.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 9.0e-193 677.2 456 75.7
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.0e-192 676.0 450 74.4
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.4e-192 675.2 449 76.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 9.9e-192 673.7 453 74.2
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.9e-191 672.2 455 78.9
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.9e-191 672.2 456 74.8
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.9e-190 669.5 456 74.6
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.2e-190 668.3 447 76.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 6.0e-189 664.5 451 75.2
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 7.9e-189 664.1 451 74.9
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 7.9e-189 664.1 457 74.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-188 663.7 469 73.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.3e-188 663.3 451 75.2
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.3e-188 663.3 463 74.9
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.3e-188 663.3 456 73.9
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 5.1e-188 661.4 444 76.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 5.1e-188 661.4 454 74.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 5.1e-188 661.4 453 73.7
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 8.7e-188 660.6 453 74.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.7e-188 660.6 404 80.4
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.5e-187 659.8 455 74.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.9e-187 659.4 456 73.5
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.5e-187 659.1 455 74.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 3.3e-187 658.7 434 76.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 5.6e-187 657.9 456 73.9
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.3e-186 656.8 457 73.3
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.8e-186 655.6 465 72.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.8e-186 655.6 454 72.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.7e-186 655.2 464 72.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 4.8e-186 654.8 387 82.9
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 4.8e-186 654.8 389 81.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.1e-185 653.7 455 73.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.1e-185 653.7 465 73.3
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.4e-185 653.3 416 78.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-185 653.3 455 72.5
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.4e-185 653.3 434 76.7
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 1.8e-185 652.9 459 72.1
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 3.1e-185 652.1 438 74.0
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 5.3e-185 651.4 386 81.3
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 6.9e-185 651.0 384 82.3
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.2e-184 650.2 460 72.4
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.5e-184 649.8 433 76.4
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 2.6e-184 649.0 434 76.5
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.4e-184 648.7 396 79.3
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-184 648.7 450 72.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 5.8e-184 647.9 428 77.1
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 7.6e-184 647.5 457 72.6
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 9.9e-184 647.1 458 73.4
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.3e-183 646.7 455 73.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.3e-183 646.7 456 72.1
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.7e-183 646.4 386 81.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.2e-183 646.0 386 81.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.9e-183 645.6 472 70.3
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.8e-183 645.2 455 71.6
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.4e-183 644.4 465 72.0
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 8.4e-183 644.0 387 82.2
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 8.4e-183 644.0 459 72.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.1e-182 643.7 455 71.6
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-182 643.3 437 74.4
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.9e-182 642.9 387 80.6
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.2e-182 642.1 455 71.4
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-181 640.2 405 78.8
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.6e-181 639.8 455 71.6
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.1e-181 639.4 383 79.9
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 4.6e-181 638.3 455 70.8
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.0e-181 637.9 454 70.9
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 7.9e-181 637.5 395 80.5
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.0e-180 637.1 459 73.2
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.3e-180 636.7 386 80.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 5.1e-180 634.8 452 71.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.1e-179 633.6 385 80.0
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.3e-179 632.1 466 69.5
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 7.4e-179 630.9 453 70.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.6e-178 629.8 429 72.3
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.8e-178 628.2 455 71.0
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 7.1e-174 614.4 437 71.4
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.9e-173 610.9 484 66.3
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.0e-172 610.5 404 74.3
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.3e-171 605.1 426 71.1
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 4.5e-168 595.1 406 74.4
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.0e-164 583.9 458 63.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.3e-154 550.4 454 64.1
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.5e-152 542.0 356 71.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 3.2e-150 535.8 410 65.6
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.7e-149 531.9 279 95.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.7e-146 523.5 389 66.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.8e-145 520.0 335 77.6
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.2e-141 507.3 456 60.7
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 6.1e-141 505.0 450 60.9
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 4.0e-140 502.3 421 62.0
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-135 486.1 344 72.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.5e-135 485.0 374 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 7.2e-134 481.5 345 66.4
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 2.0e-131 473.4 361 64.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.4e-131 472.2 370 64.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 5.0e-127 458.8 276 80.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 4.1e-121 439.1 258 85.3
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.5e-120 435.6 289 71.3
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 3.8e-119 432.6 314 70.4
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 7.5e-115 418.3 288 73.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 4.1e-113 412.5 434 54.1
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.3e-111 406.8 365 60.3
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 3.7e-106 389.4 327 65.4
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 3.5e-104 382.9 317 65.6
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.5e-102 376.7 234 83.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.1e-97 361.3 211 84.8
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.1e-96 357.1 378 51.6
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.3e-94 349.7 302 64.9
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 3.6e-93 346.3 329 52.6
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.9e-89 334.0 201 78.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 7.6e-83 312.0 226 70.8
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.5e-75 286.2 211 68.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.8e-71 274.2 174 77.6
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-62 244.6 188 66.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.5e-59 234.6 188 63.8
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.0e-59 234.2 356 41.0
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 3.4e-59 233.4 124 87.1
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 8.4e-58 228.8 136 82.4
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.9e-55 219.9 291 42.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.8e-45 187.2 134 67.9
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-36 158.7 135 64.4
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.4e-36 158.3 84 88.1
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 3.1e-36 157.1 113 69.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.2e-35 155.2 112 73.2
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 4.2e-33 146.7 112 68.8
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-25 122.1 77 76.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 7.5e-22 109.4 231 35.1
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.7e-21 108.2 84 66.7
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 6.3e-21 106.3 117 53.0
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.5e-17 94.4 60 83.3
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 4.2e-17 93.6 60 81.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-14 85.1 68 61.8
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.7e-14 83.2 58 62.1
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.7e-13 81.6 50 74.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 2.0e-11 74.7 44 81.8


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