Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR269150 Cardamine hirsuta HOM05D004169 ORTHO05D004942 1.1e-30 136.0 66 100.0
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 2.0e-13 78.6 39 94.9
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 2.7e-13 78.2 42 88.1
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
BcaNung01121 Brassica carinata HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 5.9e-13 77.0 39 92.3
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 1.3e-12 75.9 39 89.7
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 1.3e-12 75.9 52 71.2
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 1.3e-12 75.9 39 89.7
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 1.7e-12 75.5 39 89.7
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 1.7e-12 75.5 39 89.7
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 1.7e-12 75.5 42 85.7
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 2.3e-12 75.1 39 89.7
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 2.3e-12 75.1 39 89.7
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 2.3e-12 75.1 39 89.7
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 2.3e-12 75.1 39 89.7
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 2.9e-12 74.7 39 89.7
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 2.9e-12 74.7 49 75.5
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 3.9e-12 74.3 39 87.2
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 3.9e-12 74.3 39 87.2
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.0e-12 73.9 52 69.2
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.0e-12 73.9 52 69.2
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 6.6e-12 73.6 39 87.2
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 6.6e-12 73.6 39 87.2
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 6.6e-12 73.6 39 87.2
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 6.6e-12 73.6 37 91.9
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 87.2
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 84.6
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 8.6e-12 73.2 37 91.9
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 8.6e-12 73.2 42 83.3
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 8.6e-12 73.2 37 91.9
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 87.2
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 87.2
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 8.6e-12 73.2 37 91.9
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 8.6e-12 73.2 37 91.9
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 87.2
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 8.6e-12 73.2 39 87.2
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 8.6e-12 73.2 51 72.5
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 1.1e-11 72.8 39 87.2
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 1.1e-11 72.8 39 84.6
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 1.1e-11 72.8 37 91.9
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 1.1e-11 72.8 62 61.3
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 1.1e-11 72.8 39 87.2
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 1.5e-11 72.4 49 73.5
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 1.5e-11 72.4 49 67.3
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 1.5e-11 72.4 42 83.3
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 1.5e-11 72.4 39 84.6
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 1.5e-11 72.4 39 84.6
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 1.5e-11 72.4 39 84.6
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 1.5e-11 72.4 39 87.2
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 1.9e-11 72.0 47 78.7
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 1.9e-11 72.0 39 82.1
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 1.9e-11 72.0 42 78.6
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 1.9e-11 72.0 39 87.2
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 1.9e-11 72.0 39 84.6
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 1.9e-11 72.0 39 87.2
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 1.9e-11 72.0 39 84.6
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 2.5e-11 71.6 39 84.6
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 2.5e-11 71.6 39 84.6
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 2.5e-11 71.6 41 82.9
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 2.5e-11 71.6 39 84.6
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 2.5e-11 71.6 41 85.4
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 2.5e-11 71.6 39 84.6
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 3.3e-11 71.2 39 84.6
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 3.3e-11 71.2 42 81.0
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 3.3e-11 71.2 39 84.6
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 3.3e-11 71.2 49 73.5
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 3.3e-11 71.2 47 76.6
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 3.3e-11 71.2 39 84.6
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 3.3e-11 71.2 39 82.1
SalBow7G3670 Salvia bowleyana HOM05D004169 ORTHO05D004942 3.3e-11 71.2 35 91.4
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 3.3e-11 71.2 39 84.6
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 84.6
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 4.3e-11 70.9 38 86.8
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 82.1
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 84.6
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 82.1
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 82.1
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 4.3e-11 70.9 42 78.6
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 4.3e-11 70.9 39 84.6
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 5.6e-11 70.5 39 82.1
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 5.6e-11 70.5 49 73.5
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 5.6e-11 70.5 42 78.6
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 5.6e-11 70.5 62 59.7
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 5.6e-11 70.5 39 82.1
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 5.6e-11 70.5 42 78.6
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 7.3e-11 70.1 38 86.8
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 7.3e-11 70.1 42 78.6
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 7.3e-11 70.1 37 89.2
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 7.3e-11 70.1 49 71.4
SEGI_38743 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 7.3e-11 70.1 37 86.5
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 7.3e-11 70.1 39 82.1
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 9.5e-11 69.7 39 82.1
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 9.5e-11 69.7 52 65.4
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 1.2e-10 69.3 38 84.2
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 1.2e-10 69.3 42 76.2
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 1.6e-10 68.9 39 82.1
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 1.6e-10 68.9 39 82.1
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 1.6e-10 68.9 49 71.4
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 1.6e-10 68.9 39 79.5
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 1.6e-10 68.9 49 73.5
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.6e-10 68.9 39 79.5
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 2.1e-10 68.6 37 83.8
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 2.1e-10 68.6 37 83.8
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 2.1e-10 68.6 42 76.2
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 2.1e-10 68.6 39 79.5
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 4.7e-10 67.4 47 72.3
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 4.7e-10 67.4 39 79.5
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 4.7e-10 67.4 39 79.5
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 6.1e-10 67.0 37 83.8
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 6.1e-10 67.0 37 83.8
Solyc07g032180.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 6.1e-10 67.0 37 83.8
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 6.1e-10 67.0 37 83.8
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 6.1e-10 67.0 39 76.9
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 8.0e-10 66.6 39 76.9
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 8.0e-10 66.6 37 83.8
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 8.0e-10 66.6 37 81.1
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 8.0e-10 66.6 49 69.4
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 8.0e-10 66.6 40 75.0
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 8.0e-10 66.6 49 67.3
Psat5g014480 Pisum sativum HOM05D004169 ORTHO05D004942 1.4e-09 65.9 37 83.8
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 1.4e-09 65.9 49 67.3
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 3.1e-09 64.7 49 65.3
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 3.1e-09 64.7 37 81.1
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 4.0e-09 64.3 37 75.7
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 4.0e-09 64.3 39 71.8
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 5.2e-09 63.9 40 72.5
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 6.8e-09 63.5 39 71.8
Sed0000348 Sechium edule HOM05D004169 ORTHO05D004942 2.0e-08 62.0 33 81.8
Glyma.06G026500 Glycine max HOM05D004169 ORTHO05D004942 3.4e-08 61.2 32 90.6
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 4.4e-08 60.8 39 66.7
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 4.4e-08 60.8 35 77.1
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 5.8e-08 60.5 37 73.0
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 7.5e-08 60.1 37 73.0
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 1.3e-07 59.3 37 81.1
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 1.3e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 8.3e-07 56.6 39 66.7
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 1.4e-06 55.8 33 75.8
Gohir.D05G259151 Gossypium hirsutum HOM05D004169 ORTHO05D004942 2.4e-06 55.1 35 71.4
Gorai.009G270900 Gossypium raimondii HOM05D004169 ORTHO05D004942 2.4e-06 55.1 43 65.1


User provided reference genes

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