Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 2.2e-302 1041.6 545 100.0
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 5.0e-283 977.2 548 93.6
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 5.0e-283 977.2 551 93.6
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 8.5e-283 976.5 550 94.0
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.2e-257 892.9 554 85.9
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 1.2e-257 892.9 555 86.3
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.7e-254 882.5 572 83.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.3e-251 872.8 558 84.4
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.5e-250 869.4 548 83.8
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 9.5e-250 866.7 546 84.8
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 7.3e-242 840.5 531 84.9
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 3.4e-239 831.6 535 84.3
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 2.6e-231 805.4 559 80.0
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 7.9e-220 767.3 553 72.3
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 2.9e-198 695.7 462 81.6
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.3e-193 680.2 544 64.9
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.8e-193 679.1 533 65.5
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 3.7e-193 678.7 546 65.0
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 5.3e-192 674.9 551 64.2
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.6e-191 672.5 549 64.8
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 2.6e-191 672.5 549 64.8
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 3.4e-191 672.2 546 65.0
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 4.5e-191 671.8 548 63.9
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 5.9e-191 671.4 550 64.5
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 1.0e-190 670.6 491 69.0
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 1.4e-189 666.8 550 62.9
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 4.2e-189 665.2 550 63.5
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 6.1e-188 661.4 540 65.0
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 8.0e-188 661.0 575 60.9
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.0e-187 660.6 551 62.4
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.0e-187 660.6 550 63.3
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.8e-187 659.8 550 63.1
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 2.3e-187 659.4 560 63.2
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 3.9e-187 658.7 552 62.9
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.5e-186 656.8 554 63.7
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 5.7e-186 654.8 545 62.2
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 5.7e-186 654.8 522 64.9
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 2.2e-185 652.9 470 69.6
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 3.7e-185 652.1 474 69.6
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 4.8e-185 651.7 528 63.8
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 6.3e-185 651.4 555 62.7
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 8.2e-185 651.0 556 62.2
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 8.2e-185 651.0 553 61.7
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.1e-184 650.6 470 69.6
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 2.0e-183 646.4 478 66.9
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.0e-183 646.4 550 62.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.6e-183 646.0 474 68.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 1.0e-182 644.0 474 65.8
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-182 643.3 472 68.9
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.1e-181 640.6 460 69.8
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 1.5e-181 640.2 472 68.2
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.5e-181 640.2 542 61.8
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 1.5e-181 640.2 460 69.8
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 4.2e-181 638.6 549 61.6
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.2e-181 638.6 472 68.0
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 9.4e-181 637.5 460 69.3
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 2.7e-180 636.0 471 67.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 2.7e-180 636.0 559 61.2
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 3.6e-180 635.6 547 62.3
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 1.0e-179 634.0 471 65.4
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 5.2e-179 631.7 537 61.3
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 5.2e-179 631.7 472 66.1
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.5e-178 630.2 536 61.6
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.5e-178 630.2 469 66.1
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 2.6e-178 629.4 461 67.9
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.3e-178 629.0 471 67.5
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 3.3e-178 629.0 551 61.9
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 4.4e-178 628.6 476 66.4
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 6.3e-177 624.8 472 67.8
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 3.1e-176 622.5 500 62.6
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 7.0e-176 621.3 482 65.1
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 3.5e-175 619.0 443 69.3
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 4.5e-175 618.6 461 68.1
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 3.8e-174 615.5 546 60.3
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 4.2e-173 612.1 549 60.3
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 7.2e-173 611.3 439 70.2
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 9.4e-173 610.9 545 60.4
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.6e-172 610.1 471 65.2
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 3.6e-172 609.0 470 64.5
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.0e-171 607.4 544 61.0
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 4.0e-171 605.5 447 68.2
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 5.7e-170 601.7 470 63.4
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 1.3e-169 600.5 463 64.1
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 2.2e-169 599.7 499 59.5
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 2.0e-167 593.2 546 57.3
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 2.3e-166 589.7 546 57.0
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 5.7e-162 575.1 512 58.4
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 9.8e-162 574.3 472 63.6
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 1.3e-161 573.9 459 64.3
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.3e-161 573.9 555 57.7
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 1.2e-159 567.4 459 61.7
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.6e-159 567.0 498 58.4
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.2e-156 557.4 554 56.5
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 9.2e-152 541.2 536 53.9
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 5.6e-149 531.9 550 51.8
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 2.1e-140 503.4 373 68.1
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 4.4e-138 495.7 489 54.6
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 6.6e-134 481.9 406 60.3
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 1.3e-129 467.6 504 51.2
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 4.6e-127 459.1 474 47.7
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 6.2e-124 448.7 470 49.4
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.9e-120 437.2 468 47.0
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 6.0e-119 432.2 386 56.7
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 3.9e-118 429.5 452 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 1.1e-117 427.9 501 45.1
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-113 414.1 307 65.1
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 7.9e-111 405.2 473 45.0
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 4.9e-105 386.0 439 43.5
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-97 360.9 307 61.2
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 3.2e-72 276.9 384 50.0
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 8.2e-68 262.3 451 32.8
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 7.5e-61 239.2 424 33.3
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 1.2e-45 188.7 151 62.3
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 2.1e-39 167.9 137 56.9
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 8.9e-38 162.5 140 55.0
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 3.4e-37 160.6 195 51.8
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.4e-37 160.2 107 75.7
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 9.2e-35 152.5 220 46.8
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 3.0e-33 147.5 208 45.7
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 6.6e-33 146.4 463 24.8
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.2e-31 142.1 211 37.9
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.7e-25 121.7 120 63.3
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.1e-23 114.8 68 83.8
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 8.1e-23 112.8 114 58.8
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 1.1e-22 112.5 92 56.5
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 2.9e-20 104.4 109 51.4
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 8.3e-20 102.8 81 74.1
BraA02t07229Z Brassica rapa HOM05D011432 ORTHO05D014939 5.8e-13 80.1 40 97.5
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 3.5e-10 70.9 50 74.0
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 3.0e-09 67.8 408 21.8
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 4.8e-07 60.5 65 52.3


User provided reference genes

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