Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 4.0e-54 214.5 110 100.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 94.5
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.9e-50 200.7 110 94.5
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.3e-49 198.7 110 92.7
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.9e-49 198.4 110 91.8
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-49 197.6 110 92.7
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 6.6e-49 197.2 110 92.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 8.6e-49 196.8 110 91.8
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-48 196.4 110 91.8
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 93.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 93.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-48 196.1 111 93.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.9e-48 195.7 110 93.6
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 5.6e-48 194.1 110 90.9
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 7.3e-48 193.7 110 90.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 9.5e-48 193.4 110 90.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.2e-47 193.0 110 90.0
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.6e-47 191.4 110 89.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.5e-45 186.0 111 89.2
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.2e-39 166.4 111 76.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.0e-38 161.4 103 77.7
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.3e-36 156.4 107 72.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.9e-35 152.5 101 73.3
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.4e-35 152.1 105 72.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.2e-35 151.8 99 76.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 107 71.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 9.2e-35 150.2 107 71.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.2e-34 149.8 83 92.8
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 69.2
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 2.1e-34 149.1 100 82.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.1e-34 149.1 108 69.4
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 2.7e-34 148.7 112 67.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.7e-34 148.7 108 69.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 7.8e-34 147.1 100 81.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.0e-33 146.7 99 74.7
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.3e-33 146.4 110 68.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.7e-33 146.0 81 90.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.7e-33 146.0 107 65.4
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 2.3e-33 145.6 107 67.3
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 2.3e-33 145.6 107 67.3
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.0e-33 145.2 112 63.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 66.4
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.0e-33 145.2 105 68.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 65.4
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.9e-33 144.8 110 65.5
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.0e-33 144.4 108 65.7
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 5.0e-33 144.4 110 66.4
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 68.2
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.0e-33 144.4 107 64.5
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 6.6e-33 144.1 105 70.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 65.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 8.6e-33 143.7 107 67.3
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.1e-32 143.3 106 65.1
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.1e-32 143.3 108 66.7
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.1e-32 143.3 108 64.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.5e-32 142.9 108 64.8
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 64.5
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.9e-32 142.5 111 64.0
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 65.4
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 66.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 64.5
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.5e-32 142.1 103 66.0
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 66.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 67.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 2.5e-32 142.1 107 63.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.5e-32 142.1 101 66.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.5e-32 142.1 106 65.1
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.3e-32 141.7 107 64.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.3e-32 141.7 110 62.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.3e-32 141.7 108 66.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.3e-32 141.4 110 62.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.3e-32 141.4 110 62.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.3e-32 141.4 110 62.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.3e-32 141.4 110 62.7
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 4.3e-32 141.4 102 64.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.3e-32 141.4 106 66.0
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 4.3e-32 141.4 107 63.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.3e-32 141.4 110 62.7
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 4.3e-32 141.4 103 64.1
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 5.6e-32 141.0 106 67.9
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 5.6e-32 141.0 102 64.7
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 5.6e-32 141.0 107 63.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 5.6e-32 141.0 107 62.6
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 5.6e-32 141.0 102 64.7
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.6e-32 141.0 97 72.2
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 7.3e-32 140.6 98 70.4
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 7.3e-32 140.6 107 63.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 7.3e-32 140.6 107 64.5
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 7.3e-32 140.6 106 67.9
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 9.5e-32 140.2 110 61.8
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.5e-32 140.2 98 68.4
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 9.5e-32 140.2 108 65.7
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.2e-31 139.8 110 62.7
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 1.6e-31 139.4 106 62.3
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 106 66.0
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.6e-31 139.4 110 63.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 107 64.5
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 106 66.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.6e-31 139.4 103 64.1
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 66.4
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 62.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.1e-31 139.0 108 65.7
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 2.8e-31 138.7 106 62.3
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.8e-31 138.7 102 66.7
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 2.8e-31 138.7 105 67.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 62.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.6e-31 138.3 107 62.6
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.6e-31 138.3 106 63.2
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 4.7e-31 137.9 106 65.1
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.7e-31 137.9 105 65.7
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.2e-31 137.5 102 64.7
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 6.2e-31 137.5 105 66.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.1e-30 136.7 110 61.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.1e-30 136.7 102 62.7
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.1e-30 136.7 98 65.3
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.1e-30 136.7 98 65.3
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.1e-30 136.7 105 64.8
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.8e-30 136.0 98 66.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 2.3e-30 135.6 98 66.3
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.1e-30 135.2 110 60.0
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.1e-30 135.2 98 64.3
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.1e-30 135.2 98 64.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.1e-30 135.2 98 66.3
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 4.0e-30 134.8 98 65.3
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 4.0e-30 134.8 106 64.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 4.0e-30 134.8 102 62.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.0e-30 134.8 98 66.3
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 6.8e-30 134.0 98 65.3
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 8.9e-30 133.7 101 67.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.2e-29 133.3 102 65.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.5e-29 132.9 98 65.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 2.0e-29 132.5 98 64.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 5.8e-29 131.0 107 59.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 5.8e-29 131.0 107 59.8
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 3.7e-28 128.3 102 62.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.9e-28 127.9 93 65.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.4e-28 127.5 95 63.2
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.1e-24 116.7 107 57.0
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.1e-23 112.5 87 63.2
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 5.2e-22 107.8 84 64.3
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 5.2e-22 107.8 98 58.2
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.5e-21 106.3 91 60.4
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.5e-21 106.3 91 58.2
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 3.2e-19 98.6 84 61.9
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.7e-17 92.8 98 51.0
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.1e-16 90.1 66 63.6
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.1e-16 90.1 97 53.6
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 2.1e-15 85.9 75 60.0
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.0e-13 79.3 54 66.7
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.8e-13 77.8 65 56.9
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 2.9e-12 75.5 51 68.6
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 7.1e-11 70.9 99 41.4
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 9.3e-11 70.5 55 61.8
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.6e-10 69.7 54 63.0
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.6e-10 69.7 84 44.0
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.0e-09 67.0 54 59.3
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.7e-09 66.2 75 46.7
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 7.3e-08 60.8 110 36.4
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.4e-06 56.6 44 65.9


User provided reference genes

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