Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 8.4e-160 567.0 292 100.0
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.0e-153 545.8 292 94.5
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 2.6e-153 545.4 294 95.2
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 2.6e-153 545.4 294 95.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 4.4e-153 544.7 294 95.2
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 7.1e-151 537.3 293 94.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.1e-150 535.8 293 94.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.7e-150 535.4 294 93.9
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 3.0e-149 531.9 291 94.5
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-148 528.9 294 93.2
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 6.4e-144 514.2 294 89.8
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.9e-143 512.7 282 93.6
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 3.1e-130 468.8 292 80.8
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.5e-127 459.1 292 80.5
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.6e-126 455.3 293 79.9
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-125 453.8 292 79.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.0e-125 453.8 292 79.5
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 3.0e-125 452.2 292 80.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.7e-125 451.1 292 79.1
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.1e-124 450.3 292 79.1
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 2.5e-124 449.1 292 78.1
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 4.3e-124 448.4 292 79.8
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.7e-124 448.0 292 80.1
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 7.4e-124 447.6 295 77.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.3e-123 446.8 292 79.5
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.2e-123 446.0 292 78.1
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.2e-123 446.0 292 78.4
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.3e-123 444.5 292 78.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.1e-122 442.2 292 77.1
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.1e-122 441.8 292 78.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 6.9e-122 441.0 292 77.1
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 9.0e-122 440.7 290 79.0
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.5e-121 439.9 292 78.1
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.0e-121 439.5 290 79.0
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.0e-121 439.5 290 79.0
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.0e-121 439.5 293 76.8
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.6e-121 439.1 290 79.0
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.6e-121 439.1 293 78.2
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 3.4e-121 438.7 286 78.0
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 77.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-120 436.0 290 77.9
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.0e-120 434.9 297 75.8
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 8.5e-120 434.1 294 76.2
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.9e-119 433.0 290 77.6
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.2e-119 431.8 296 73.6
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 7.2e-119 431.0 293 75.4
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 9.4e-119 430.6 296 75.0
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 9.4e-119 430.6 299 75.6
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.6e-118 429.9 294 75.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 6.1e-118 427.9 284 78.9
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 7.9e-118 427.6 284 78.9
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.4e-117 426.8 284 78.9
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.9e-117 425.2 294 73.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.5e-116 423.3 290 73.8
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 294 74.1
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.7e-116 421.4 299 74.2
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 7.4e-116 421.0 296 74.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-115 420.2 297 74.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.7e-115 419.9 292 75.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.2e-115 419.5 297 73.7
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.2e-115 419.5 294 74.8
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.8e-115 419.1 294 74.8
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 6.3e-115 417.9 294 74.5
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 8.2e-115 417.5 298 73.8
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.1e-114 417.2 292 74.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.1e-114 417.2 292 74.0
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.1e-114 417.2 293 74.4
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.8e-114 416.4 290 74.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.4e-114 416.0 292 72.3
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 2.4e-114 416.0 297 72.4
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.4e-114 416.0 290 75.2
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 74.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 4.1e-114 415.2 290 74.5
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.3e-114 414.8 292 72.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 6.9e-114 414.5 291 75.6
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.0e-113 412.9 290 72.8
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.0e-113 412.9 291 73.9
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 4.5e-113 411.8 295 73.6
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.5e-113 411.8 292 72.3
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.5e-113 411.8 292 72.3
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 71.9
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.3e-112 410.2 292 71.9
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.7e-112 409.8 292 72.9
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.2e-112 409.5 290 72.1
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.2e-112 409.5 290 72.1
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 6.5e-112 407.9 292 74.0
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.5e-112 407.5 291 74.2
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 8.5e-112 407.5 292 74.0
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 8.5e-112 407.5 290 73.1
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 8.5e-112 407.5 292 71.2
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.1e-111 407.1 293 70.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-111 406.8 292 71.6
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.9e-111 406.4 292 70.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 3.2e-111 405.6 297 70.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 7.2e-111 404.4 290 74.1
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 9.4e-111 404.1 296 72.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.2e-110 403.7 292 72.6
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.6e-110 403.3 293 72.4
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.6e-110 403.3 294 71.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.1e-110 402.9 285 73.3
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 3.6e-110 402.1 298 71.5
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.6e-110 402.1 292 72.9
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.0e-109 400.6 298 71.8
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.3e-109 399.4 293 70.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 3.9e-109 398.7 295 71.2
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 8.8e-109 397.5 279 76.3
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.0e-108 396.4 285 71.6
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 3.3e-108 395.6 292 71.6
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.3e-108 395.6 292 72.9
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 3.3e-108 395.6 283 72.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.7e-108 394.0 292 70.5
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.3e-107 393.7 291 71.8
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 8.2e-107 391.0 294 70.4
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.4e-106 390.2 294 70.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.3e-106 388.3 214 94.4
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 5.3e-106 388.3 296 68.6
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 7.0e-106 387.9 285 70.2
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 9.1e-106 387.5 296 68.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 3.5e-105 385.6 295 70.2
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 3.5e-105 385.6 296 70.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.7e-104 383.3 290 69.7
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 6.5e-104 381.3 286 71.0
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 6.5e-104 381.3 296 69.6
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 4.2e-103 378.6 273 71.8
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 4.4e-100 368.6 296 68.2
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 7.5e-100 367.9 295 65.1
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.3e-99 367.1 292 69.9
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 2.2e-99 366.3 286 65.7
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 4.8e-99 365.2 291 65.6
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.4e-98 363.6 304 64.8
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.2e-94 350.5 303 64.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-94 350.1 291 66.7
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.7e-94 348.6 303 64.0
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.1e-94 348.2 293 65.9
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 5.2e-93 345.1 300 62.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 6.8e-93 344.7 295 65.1
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 6.3e-91 338.2 295 62.7
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 3.1e-90 335.9 295 62.7
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.1e-90 335.9 295 62.4
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-88 329.7 262 66.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.4e-85 320.5 247 68.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.4e-85 320.5 293 60.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.0e-82 308.1 291 58.4
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-77 293.5 280 57.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.4e-74 283.9 292 54.1
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-73 280.4 268 56.7
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 2.2e-67 260.0 195 73.3
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 5.2e-61 238.8 143 80.4
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.7e-59 232.6 282 47.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 3.7e-59 232.6 268 53.4
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.2e-58 228.0 278 51.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 4.6e-49 199.1 126 73.0
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 2.5e-47 193.4 167 65.3
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.3e-47 193.0 152 65.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 7.1e-42 175.3 145 66.9
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.4e-26 123.6 100 70.0
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 8.7e-24 115.2 332 26.8
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.6e-22 110.9 109 58.7
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-21 107.5 109 56.9
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 2.6e-20 103.6 71 76.1
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 4.2e-18 96.3 98 58.2
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 5.7e-15 85.9 73 57.5
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 3.9e-08 63.2 86 47.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-07 61.6 72 50.0


User provided reference genes

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