Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 0.0e+00 1231.5 679 100.0
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.1e-285 984.2 702 81.5
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.7e-283 978.0 699 81.3
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.2e-275 952.2 675 81.0
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 5.7e-268 927.5 704 77.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 9.7e-252 873.6 706 74.4
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 6.5e-248 860.9 703 72.7
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.8e-232 808.5 690 71.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.0e-221 771.9 699 68.0
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.5e-215 752.7 682 67.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.6e-214 750.0 690 67.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 8.6e-208 727.6 685 66.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-207 726.5 682 66.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.1e-206 723.0 717 63.3
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.8e-206 722.6 689 65.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.3e-190 670.6 681 64.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.4e-186 656.4 631 61.6
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 5.1e-160 568.9 749 48.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.3e-158 564.3 736 50.7
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 8.2e-158 561.6 747 51.8
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 8.2e-158 561.6 746 50.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 3.1e-157 559.7 749 49.3
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.4e-156 556.2 746 49.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.7e-155 553.9 763 50.9
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.5e-155 552.0 765 51.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.4e-154 550.8 762 49.3
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.5e-154 550.1 763 48.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.6e-153 546.2 752 49.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.6e-153 545.8 752 51.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 5.7e-151 538.9 736 49.0
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.2e-150 537.0 750 50.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.4e-149 533.5 751 50.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.2e-148 531.2 747 48.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.9e-147 526.6 759 46.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.8e-147 526.2 757 47.7
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.8e-147 526.2 747 50.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.0e-147 525.8 759 45.8
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 5.0e-147 525.8 749 49.8
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.2e-145 521.2 747 49.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-145 521.2 749 46.3
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 4.7e-145 519.2 753 48.9
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 3.0e-144 516.5 705 50.2
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.0e-144 516.5 705 50.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.9e-144 516.2 752 49.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 3.9e-144 516.2 749 45.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.1e-144 515.8 742 49.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.5e-143 514.2 740 46.5
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.6e-143 513.5 752 45.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 7.4e-143 511.9 711 48.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.3e-142 511.1 752 49.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.3e-142 511.1 762 46.3
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.3e-142 508.8 755 48.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.1e-141 508.1 746 46.4
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.4e-141 507.7 672 51.5
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.4e-141 507.7 748 46.8
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.4e-141 506.9 756 45.2
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 3.1e-141 506.5 752 47.2
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.1e-141 506.1 724 48.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 9.1e-141 505.0 617 54.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 9.1e-141 505.0 757 48.1
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.6e-140 503.4 748 47.7
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.5e-140 503.1 747 47.7
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.2e-139 500.4 758 46.3
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.9e-139 500.0 750 47.2
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.5e-139 498.8 747 47.7
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 3.2e-138 496.5 745 46.0
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 9.4e-138 495.0 740 47.6
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 8.0e-137 491.9 716 46.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.0e-136 491.5 751 46.1
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 6.7e-136 488.8 742 48.2
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-136 488.8 732 46.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-135 487.3 748 47.1
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 4.4e-135 486.1 789 44.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.2e-134 483.8 758 46.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 4.8e-134 482.6 827 43.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.8e-133 480.7 668 48.1
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.8e-133 480.7 734 47.5
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.1e-133 479.9 634 52.4
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.0e-132 477.2 758 45.1
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.2e-131 473.8 765 43.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.9e-131 473.4 755 45.0
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.1e-130 471.5 705 48.4
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 3.2e-130 469.9 741 46.0
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.3e-128 463.8 625 52.0
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.8e-128 461.8 762 45.7
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.5e-127 458.8 710 44.9
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.8e-127 458.4 732 45.2
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.8e-126 456.1 753 46.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.3e-126 455.3 753 46.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 8.3e-126 455.3 757 44.1
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 3.1e-125 453.4 728 44.6
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.6e-124 451.1 725 43.6
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.0e-124 450.7 749 46.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.7e-124 450.3 761 45.9
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.5e-124 449.9 753 45.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.7e-123 447.6 649 49.0
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.5e-122 444.5 653 45.5
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-121 440.7 749 45.7
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 8.0e-121 438.7 732 45.1
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.4e-120 438.0 753 43.2
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 5.2e-120 436.0 734 42.1
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 5.7e-119 432.6 732 42.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.8e-118 430.3 747 43.1
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 4.9e-118 429.5 782 40.8
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 8.3e-118 428.7 713 43.9
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-117 427.9 682 46.5
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 3.1e-117 426.8 743 45.0
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.7e-116 423.7 706 43.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.5e-116 422.9 761 43.5
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 7.7e-116 422.2 703 44.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.9e-115 420.2 716 43.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.5e-114 417.9 774 42.1
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-114 417.9 786 42.9
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 4.2e-114 416.4 796 41.6
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-111 407.1 746 42.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 7.5e-111 405.6 549 50.6
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.7e-110 404.4 613 44.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-110 404.4 740 41.1
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 7.0e-109 399.1 757 39.5
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.6e-108 397.9 775 39.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.7e-108 397.1 713 42.1
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.7e-108 397.1 741 42.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.7e-105 386.3 738 41.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 8.0e-105 385.6 742 41.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-104 384.8 767 40.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.8e-104 384.4 716 43.2
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 6.8e-104 382.5 583 46.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.3e-99 367.5 755 41.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.2e-95 355.1 730 40.1
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.7e-94 351.3 587 44.1
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.9e-93 347.8 727 39.3
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 7.1e-93 345.9 724 38.4
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 7.3e-90 335.9 707 38.5
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.6e-89 334.7 669 38.1
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.7e-89 333.2 730 37.4
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 7.9e-68 262.7 306 52.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 7.9e-68 262.7 306 52.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 3.9e-67 260.4 406 48.3
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.1e-66 258.8 744 34.8
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 5.6e-66 256.5 419 44.2
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 6.2e-65 253.1 160 82.5
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.3e-62 245.4 340 52.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.4e-61 241.9 433 43.4
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 7.1e-61 239.6 433 43.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 4.8e-57 226.9 814 31.9
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.9e-53 214.9 738 29.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 8.7e-51 206.1 293 48.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.5e-47 195.3 361 41.6
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 6.7e-43 179.9 297 43.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-38 166.0 373 39.4
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 1.0e-35 156.0 146 67.8
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.4e-35 155.6 644 28.6
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 5.1e-35 153.7 157 58.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 6.3e-33 146.7 697 29.6
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-27 129.4 114 64.0
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 6.3e-25 120.2 398 33.4
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 8.5e-22 109.8 105 61.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 8.5e-22 109.8 105 61.0
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 7.2e-21 106.7 170 42.4
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-20 105.9 147 42.9
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.1e-20 105.1 150 42.0
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.3e-17 95.9 77 64.9
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 9.1e-16 89.7 109 45.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.6e-15 89.0 307 32.6
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 5.0e-14 84.0 109 43.1
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 3.7e-09 67.8 140 39.3
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 1.4e-08 65.9 34 94.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 7.0e-08 63.5 74 50.0
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.6e-07 62.4 100 46.0
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 1.6e-07 62.4 47 72.3
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 2.7e-07 61.6 129 38.0


User provided reference genes

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