Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 1.2e-109 400.2 257 100.0
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.6e-56 223.0 284 65.5
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.3e-55 220.7 285 61.8
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 6.4e-55 218.4 260 60.0
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 8.4e-55 218.0 279 63.1
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 2.7e-53 213.0 278 63.3
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 6.0e-53 211.8 279 63.1
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 6.0e-53 211.8 279 63.1
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 3.0e-52 209.5 285 53.0
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 6.7e-52 208.4 281 64.4
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 1.1e-51 207.6 279 60.9
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.1e-49 199.5 285 50.5
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 4.0e-49 199.1 278 59.4
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 1.2e-48 197.6 285 49.8
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.0e-48 196.8 278 60.4
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 9.9e-48 194.5 279 60.6
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 9.9e-48 194.5 285 57.5
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 1.3e-47 194.1 283 52.7
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.9e-47 193.0 284 53.9
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 2.9e-47 193.0 284 53.2
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 3.8e-47 192.6 286 52.4
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 8.4e-47 191.4 284 58.8
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-45 186.8 277 47.7
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 2.7e-45 186.4 283 53.0
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 3.5e-45 186.0 284 52.8
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 4.6e-45 185.7 283 47.7
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 7.9e-45 184.9 275 47.3
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 1.0e-44 184.5 283 49.8
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.0e-44 184.5 284 47.2
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 2.3e-44 183.3 279 58.1
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 3.0e-44 183.0 284 54.2
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 3.0e-44 183.0 280 51.8
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.3e-43 179.5 285 53.0
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 5.6e-43 178.7 285 47.4
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 1.6e-42 177.2 284 47.5
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 1.6e-42 177.2 281 52.7
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 2.8e-42 176.4 283 47.3
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 4.8e-42 175.6 283 56.9
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 8.2e-42 174.9 284 47.2
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 1.1e-41 174.5 283 56.5
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 2.4e-41 173.3 282 47.5
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 5.3e-41 172.2 281 45.2
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.3e-39 167.5 272 49.6
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 1.3e-39 167.5 257 51.4
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.2e-39 166.8 272 56.2
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 3.8e-39 166.0 261 51.7
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 4.9e-39 165.6 262 53.1
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 6.5e-39 165.2 255 51.0
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 1.1e-38 164.5 257 50.6
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 1.4e-38 164.1 257 51.0
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.4e-38 164.1 283 44.9
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.9e-38 163.7 261 47.5
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 2.5e-38 163.3 260 52.7
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 1.2e-37 161.0 258 49.2
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 1.6e-37 160.6 282 48.2
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 2.1e-37 160.2 283 45.9
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 2.7e-37 159.8 283 45.6
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 2.7e-37 159.8 283 45.6
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 3.5e-37 159.5 283 54.8
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 3.5e-37 159.5 256 48.8
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 4.6e-37 159.1 261 48.7
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 4.6e-37 159.1 260 48.5
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.9e-37 158.3 257 47.5
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.9e-37 158.3 257 47.5
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 7.9e-37 158.3 260 46.5
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.0e-36 157.9 259 47.1
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 2.3e-36 156.8 259 47.5
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 2.3e-36 156.8 267 52.8
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 3.0e-36 156.4 283 50.9
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 5.1e-36 155.6 274 48.2
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 1.1e-35 154.5 275 46.9
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 3.3e-35 152.9 257 46.3
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 3.3e-35 152.9 253 46.2
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 3.3e-35 152.9 286 46.2
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 4.3e-35 152.5 259 49.8
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 4.3e-35 152.5 257 46.3
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 5.7e-35 152.1 257 45.9
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.4e-35 151.8 243 47.3
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 7.4e-35 151.8 243 47.3
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 9.7e-35 151.4 259 46.3
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 9.7e-35 151.4 281 45.6
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 9.7e-35 151.4 257 47.1
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 1.3e-34 151.0 256 46.5
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.3e-34 151.0 260 47.7
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 2.8e-34 149.8 282 42.9
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 2.8e-34 149.8 282 42.9
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 2.8e-34 149.8 282 42.9
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.8e-34 149.8 257 46.7
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.8e-34 149.8 256 45.3
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 4.8e-34 149.1 256 53.1
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 4.8e-34 149.1 257 46.7
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 8.2e-34 148.3 256 46.5
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 1.1e-33 147.9 257 55.6
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 1.4e-33 147.5 264 48.1
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 2.4e-33 146.7 255 48.6
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 2.4e-33 146.7 258 49.2
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 2.4e-33 146.7 262 44.7
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 4.1e-33 146.0 258 48.1
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 5.3e-33 145.6 259 45.2
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 5.3e-33 145.6 260 45.4
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 5.3e-33 145.6 254 46.1
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 6.9e-33 145.2 273 52.7
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 6.9e-33 145.2 279 48.4
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 2.0e-32 143.7 256 56.2
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 2.6e-32 143.3 256 51.6
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 2.6e-32 143.3 282 43.6
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.4e-32 142.9 259 45.9
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 4.5e-32 142.5 256 45.3
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 1.0e-31 141.4 279 52.0
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 1.0e-31 141.4 279 52.0
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 1.0e-31 141.4 260 43.5
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 1.7e-31 140.6 254 54.7
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.9e-31 139.8 255 54.9
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 5.0e-31 139.0 256 44.5
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 6.5e-31 138.7 264 46.2
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 8.5e-31 138.3 254 45.3
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 1.4e-30 137.5 258 42.6
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 1.4e-30 137.5 259 46.3
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 1.4e-30 137.5 297 41.4
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 1.9e-30 137.1 257 50.6
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 7.2e-30 135.2 259 46.3
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-29 134.0 213 52.6
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 2.7e-29 133.3 266 51.5
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 2.7e-29 133.3 260 46.9
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 3.6e-29 132.9 259 46.3
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 7.9e-29 131.7 255 42.0
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 2.3e-28 130.2 260 41.5
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 3.9e-28 129.4 283 46.6
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 5.1e-28 129.0 256 41.4
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 1.5e-27 127.5 283 47.7
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 1.5e-27 127.5 257 41.6
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 3.3e-27 126.3 138 55.8
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 4.3e-27 125.9 276 39.9
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 9.7e-27 124.8 252 39.7
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 1.3e-26 124.4 242 44.2
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 4.8e-26 122.5 261 42.1
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 8.2e-26 121.7 258 41.1
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.4e-25 120.9 259 42.1
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 3.1e-25 119.8 115 60.0
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 4.1e-25 119.4 120 59.2
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 9.1e-25 118.2 258 34.5
AL8G27400 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 1.5e-24 117.5 74 79.7
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 2.6e-24 116.7 287 38.0
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 3.4e-24 116.3 262 50.0
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 5.9e-24 115.5 256 43.8
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 7.7e-24 115.2 264 49.6
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.6e-21 105.9 107 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 7.9e-21 105.1 259 38.6
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 1.0e-20 104.8 259 39.4
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.4e-20 104.4 242 44.6
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 2.3e-20 103.6 280 35.4
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.3e-20 103.6 249 51.8
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.4e-17 94.4 190 44.2
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.9e-17 92.0 104 49.0
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 1.7e-15 87.4 106 45.3
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 1.2e-13 81.3 249 35.3
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.6e-13 79.7 246 39.8
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.8e-12 77.4 262 37.8
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.1e-11 74.7 263 37.3
COL.COLO4_17202 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.0e-11 73.9 112 42.0
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.6e-11 73.6 90 45.6
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.4e-11 72.8 87 47.1
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 1.8e-09 67.4 258 36.0
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 2.4e-09 67.0 93 40.9
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 7.7e-08 62.0 109 34.9
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 1.3e-07 61.2 238 31.9
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.5e-06 57.8 205 29.3
Atru.chr1.1444 Acer truncatum HOM05D003466 ORTHO05D004102 2.5e-06 57.0 78 51.3
vmacro20985 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 4.2e-06 56.2 246 28.5


User provided reference genes

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