Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 6.9e-196 687.6 400 100.0
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-170 602.4 401 88.8
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.2e-169 598.6 398 88.4
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.1e-168 596.3 402 88.3
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.1e-168 596.3 402 88.3
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.1e-168 596.3 402 88.3
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 8.0e-168 594.3 401 87.8
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.2e-166 590.5 400 87.2
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.5e-166 590.1 402 87.8
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.5e-166 590.1 402 87.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 4.4e-166 588.6 387 89.9
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.1e-164 583.9 400 86.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-164 582.8 403 76.4
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 5.0e-162 575.1 402 78.6
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 6.8e-159 564.7 401 84.8
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.5e-145 519.6 399 69.4
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 7.3e-145 518.1 401 75.1
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.6e-144 516.9 396 77.5
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.3e-143 513.1 404 72.3
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 5.7e-142 508.4 389 77.6
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.1e-140 504.2 410 68.3
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.8e-140 503.4 392 77.3
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 2.4e-140 503.1 389 76.9
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.4e-140 503.1 407 67.1
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.6e-139 500.4 419 67.8
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 2.0e-139 500.0 407 73.2
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 2.0e-139 500.0 407 73.2
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 3.5e-139 499.2 407 73.2
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 5.9e-139 498.4 401 72.3
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 7.8e-139 498.0 394 71.6
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.8e-139 498.0 419 67.5
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.1e-137 494.2 389 74.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 9.5e-137 491.1 389 71.0
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.1e-136 490.0 389 70.4
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 5.2e-135 485.3 405 73.8
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 8.9e-135 484.6 403 72.7
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.2e-134 484.2 406 67.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 5.8e-134 481.9 406 68.2
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 9.8e-134 481.1 397 67.5
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.7e-133 479.2 399 73.9
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 3.7e-133 479.2 402 72.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.4e-132 477.2 402 72.4
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.4e-132 477.2 402 72.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.9e-132 476.9 403 69.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.9e-132 476.9 402 72.6
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-132 476.5 415 65.1
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 3.2e-132 476.1 402 72.6
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.1e-132 475.7 403 69.0
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.4e-132 475.3 402 64.9
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 9.2e-132 474.6 399 71.9
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 9.2e-132 474.6 403 69.0
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.2e-131 474.2 389 74.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.2e-131 474.2 402 69.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.6e-131 473.8 404 73.8
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 6.0e-131 471.9 402 71.1
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.3e-130 470.7 389 73.8
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.3e-130 470.7 389 73.8
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-130 469.9 419 64.0
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 3.9e-130 469.2 402 66.9
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 3.9e-130 469.2 402 66.9
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 6.6e-130 468.4 392 72.7
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-129 466.8 403 71.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 2.5e-129 466.5 399 70.9
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.5e-129 466.5 404 67.3
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 4.3e-129 465.7 389 73.3
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 4.3e-129 465.7 399 71.2
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 7.3e-129 464.9 398 68.3
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 7.3e-129 464.9 396 71.2
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 9.5e-129 464.5 402 66.7
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.2e-128 464.2 392 63.5
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.2e-128 464.2 401 70.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.2e-128 464.2 401 70.8
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.6e-128 463.8 401 72.6
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 4.7e-128 462.2 431 61.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.2e-128 461.8 406 70.4
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 8.1e-128 461.5 399 70.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.4e-127 460.7 398 71.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.3e-127 459.9 389 71.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 2.3e-127 459.9 398 71.1
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.1e-127 459.5 389 71.7
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 3.1e-127 459.5 406 70.0
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 8.9e-127 458.0 398 71.9
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-126 457.6 398 64.1
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 1.5e-126 457.2 399 70.4
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.0e-126 456.8 389 72.8
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 3.4e-126 456.1 402 68.4
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 3.4e-126 456.1 397 70.5
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.7e-125 453.8 389 71.5
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 3.7e-125 452.6 400 70.0
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.9e-125 452.2 401 69.8
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 4.9e-125 452.2 394 70.6
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 8.3e-125 451.4 406 68.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 2.4e-124 449.9 408 61.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 3.2e-124 449.5 398 72.4
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.1e-124 449.1 389 70.2
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 5.4e-124 448.7 390 68.5
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 2.1e-123 446.8 401 71.8
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.7e-123 446.4 420 63.1
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 7.8e-123 444.9 389 72.0
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.0e-122 444.5 393 70.0
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 3.3e-121 439.5 400 66.5
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 4.3e-121 439.1 401 69.1
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 5.6e-121 438.7 428 60.0
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.2e-120 435.3 520 56.9
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 6.8e-119 431.8 404 65.8
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-118 431.0 402 62.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.9e-117 426.4 399 65.7
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.2e-115 421.0 390 69.0
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 6.0e-115 418.7 388 66.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 3.9e-114 416.0 360 72.2
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-113 414.5 398 64.8
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.2e-112 411.0 401 67.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 2.8e-112 409.8 389 66.8
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.4e-111 407.5 389 67.1
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.6e-110 403.3 405 65.7
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 4.4e-110 402.5 405 65.4
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 5.8e-110 402.1 405 65.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.9e-109 399.8 522 51.5
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.9e-109 399.8 368 60.3
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.9e-109 399.1 449 48.8
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 3.2e-108 396.4 391 56.8
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 7.1e-108 395.2 389 66.1
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.6e-107 394.0 408 57.8
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 7.8e-107 391.7 406 57.9
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.7e-106 390.6 399 60.4
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 2.1e-104 383.6 405 55.8
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-100 369.8 397 55.9
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.7e-99 366.7 294 78.6
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-96 356.7 386 53.4
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.2e-93 347.1 387 51.2
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.5e-92 342.4 335 60.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 9.3e-92 341.7 314 71.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.3e-88 331.3 373 51.7
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.5e-86 324.3 258 72.5
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 3.4e-86 323.2 317 65.3
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-85 320.5 258 72.1
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.5e-81 307.8 248 71.0
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.4e-79 301.2 414 47.3
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 8.5e-77 292.0 197 69.5
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 3.0e-74 283.5 398 43.0
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 5.9e-70 269.2 397 48.4
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.2e-67 261.5 189 68.3
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.2e-60 236.9 293 60.1
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.5e-57 228.0 305 45.6
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 5.0e-53 213.0 119 81.5
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-52 211.8 297 44.1
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.4e-50 204.9 119 79.0
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.0e-49 201.1 150 64.7
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-45 188.3 120 73.3
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.5e-44 184.1 372 38.7
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 8.8e-42 175.6 125 65.6
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.8e-35 154.1 83 81.9
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.0e-33 147.9 105 68.6
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.8e-32 144.1 90 78.9
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-30 138.7 106 68.9
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 4.5e-30 136.7 95 73.7
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 2.5e-28 131.0 180 40.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 2.8e-27 127.5 150 48.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 6.1e-27 126.3 79 77.2
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.0e-22 111.3 292 34.6
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.0e-21 109.0 120 63.3
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.0e-21 107.5 118 46.6
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 5.0e-21 106.7 54 83.3
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 8.6e-21 105.9 75 66.7
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 9.5e-20 102.4 82 61.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 1.1e-18 99.0 78 56.4
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.3e-18 97.8 50 78.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.3e-16 92.0 65 63.1
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.0e-13 80.9 110 41.8
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.1e-12 79.0 58 60.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 2.5e-12 77.8 46 73.9
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.6e-11 75.1 39 79.5
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 8.1e-11 72.8 40 77.5
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 8.1e-11 72.8 40 77.5
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-10 72.4 38 78.9
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.1e-10 70.9 39 71.8
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.1e-10 70.9 38 76.3
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.2e-08 64.7 40 65.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 5.4e-07 60.1 34 70.6
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 9.2e-07 59.3 54 48.1
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 9.2e-07 59.3 54 48.1
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 9.2e-07 59.3 54 48.1
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 1.6e-06 58.5 52 50.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.6e-06 58.5 67 43.3
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 7.8e-06 56.2 38 57.9


User provided reference genes

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