Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1886.3 972 100.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1607.8 980 84.4
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1591.2 982 84.0
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1587.4 980 83.7
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1563.1 979 83.5
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1555.4 979 82.4
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1526.1 977 81.8
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1524.6 977 81.7
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1513.4 976 80.4
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1513.4 976 80.4
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1503.4 978 80.0
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1489.2 977 80.9
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1483.0 977 80.7
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1458.4 977 79.4
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1443.3 978 77.6
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1419.4 977 78.1
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.2e-308 1063.1 872 63.2
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 2.9e-281 972.2 973 54.0
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 2.1e-279 966.1 673 77.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 3.5e-279 965.3 937 55.2
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 5.3e-275 951.4 978 53.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 2.2e-273 946.0 1040 51.4
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 3.8e-273 945.3 1024 52.0
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 5.4e-272 941.4 856 57.4
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 6.0e-271 937.9 939 54.1
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 7.8e-271 937.6 1000 53.4
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 5.1e-270 934.9 1019 51.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.1e-269 933.7 961 54.0
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 2.5e-269 932.6 950 53.8
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 3.3e-269 932.2 999 52.0
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 9.6e-269 930.6 981 53.1
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 1.6e-268 929.9 981 53.0
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.8e-267 926.4 1013 51.8
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 2.4e-267 926.0 973 52.7
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.0e-266 922.9 928 53.7
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 2.2e-265 919.5 1046 50.2
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 2.9e-265 919.1 1000 51.8
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 3.8e-265 918.7 1010 51.0
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 3.8e-265 918.7 980 52.3
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 8.4e-265 917.5 1001 53.2
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 1.1e-264 917.1 1011 51.7
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 1.4e-264 916.8 951 54.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 1.4e-264 916.8 1015 51.9
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 1.9e-264 916.4 1033 51.8
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.2e-263 913.7 877 55.4
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 3.5e-263 912.1 977 52.5
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.0e-262 910.6 1022 50.8
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.0e-262 910.6 957 52.7
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 6.7e-262 907.9 963 52.5
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 1.1e-261 907.1 955 52.6
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.5e-261 906.7 1022 50.7
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.5e-261 906.7 957 52.6
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 1.9e-261 906.4 941 53.2
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 4.3e-261 905.2 1022 50.6
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-260 902.1 1000 50.5
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-260 902.1 1022 50.1
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 3.1e-259 899.0 1034 50.7
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.5e-257 891.3 871 54.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.5e-256 889.4 925 52.8
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.1e-255 886.3 925 52.6
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 7.4e-253 877.9 1035 49.2
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 1.1e-251 874.0 965 50.6
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.7e-249 866.7 966 48.0
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 3.8e-249 865.5 1039 48.5
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 5.0e-249 865.1 879 53.2
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.1e-248 864.0 977 49.9
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.9e-248 863.2 1019 49.2
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 2.5e-248 862.8 959 51.0
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.6e-247 860.1 891 51.2
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 6.1e-247 858.2 889 51.2
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 7.9e-247 857.8 1048 49.0
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 3.3e-245 852.4 956 50.1
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 9.7e-245 850.9 872 53.4
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 6.3e-244 848.2 1024 49.2
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.2e-244 847.8 1026 48.4
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.0e-242 843.2 956 50.3
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 1.3e-241 840.5 875 52.0
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 6.5e-241 838.2 960 50.4
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 2.0e-237 826.6 863 52.1
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 9.7e-237 824.3 900 52.0
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 2.2e-236 823.2 987 49.2
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 4.2e-232 808.9 958 50.2
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 1.4e-230 803.9 979 47.4
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.1e-229 800.8 866 49.4
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 7.4e-229 798.1 862 50.8
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 7.4e-229 798.1 970 46.1
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 5.3e-227 792.0 843 51.6
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 5.9e-226 788.5 869 52.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 4.7e-223 778.9 855 50.1
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.1e-219 767.7 1024 44.4
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 7.0e-219 765.0 980 45.1
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 7.7e-218 761.5 1023 45.4
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 4.7e-215 752.3 966 45.2
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 9.1e-211 738.0 974 47.0
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.5e-209 731.5 798 50.5
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 3.2e-208 729.6 844 46.8
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.2e-207 727.6 609 59.8
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.2e-206 722.2 807 49.6
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 6.8e-198 695.3 988 43.2
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.4e-197 693.0 776 49.6
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.5e-178 629.8 542 58.1
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 6.0e-178 629.0 554 57.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.1e-177 625.9 549 58.7
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.4e-173 612.8 608 50.7
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.0e-169 600.1 620 50.8
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 4.9e-156 556.2 403 68.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 5.0e-124 449.9 480 48.1
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 8.2e-119 432.6 400 56.5
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.2e-88 332.4 464 46.6
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.6e-74 284.3 507 39.3
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-68 265.8 417 45.8
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 6.4e-55 220.3 312 41.0
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.4e-47 193.4 467 31.0
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.8e-45 186.8 157 53.5
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-44 186.4 467 30.8
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-44 186.4 467 30.8
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.3e-43 181.4 373 32.4
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 5.4e-38 164.1 768 23.8
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.9e-37 160.2 90 80.0
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.0e-36 158.3 480 28.5
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 4.5e-32 144.4 198 41.9
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.6e-29 134.4 328 29.6
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.4e-25 122.1 399 28.3
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-20 106.3 487 26.7
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.4e-19 100.5 325 29.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.5e-16 92.8 150 36.0
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.1e-12 77.8 60 68.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.3e-11 75.1 481 23.7
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.5e-08 66.2 311 22.8
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.7e-08 63.9 311 22.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.9e-07 62.0 102 39.2
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 3.8e-07 61.6 115 27.0
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.1e-06 60.1 109 34.9
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 1.4e-06 59.7 138 30.4
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.9e-06 59.3 157 26.8
Nn7g38034 Nelumbo nucifera HOM05D003725 ORTHO05D004294 7.2e-06 57.4 117 31.6
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 9.4e-06 57.0 118 27.1


User provided reference genes

Program Settings