Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.0e-93 346.7 167 100.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 5.4e-87 324.3 167 94.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.1e-85 317.8 167 92.2
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.4e-82 309.7 167 89.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.3e-80 303.1 167 87.4
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 5.4e-79 297.7 167 86.8
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 9.2e-79 297.0 163 86.5
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.3e-77 293.1 167 85.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.3e-77 293.1 167 85.6
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.7e-77 292.7 163 85.3
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.0e-73 279.3 175 77.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 9.3e-63 243.8 174 68.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 4.6e-46 188.3 166 56.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.7e-45 184.1 173 52.0
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-44 183.7 173 51.4
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.5e-44 183.3 173 52.0
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.9e-44 183.0 170 54.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.5e-44 182.6 175 51.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.3e-44 182.2 168 54.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.3e-44 181.8 166 54.8
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 4.3e-44 181.8 168 53.6
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 4.3e-44 181.8 169 52.7
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 5.7e-44 181.4 172 55.8
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.7e-44 181.4 172 55.8
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 7.4e-44 181.0 167 56.3
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.7e-44 180.6 168 54.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 9.7e-44 180.6 168 54.8
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.3e-43 180.3 168 53.6
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.3e-43 180.3 168 54.8
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.3e-43 180.3 168 54.8
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.6e-43 179.9 168 54.2
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.2e-43 179.5 166 54.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 2.8e-43 179.1 167 55.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.7e-43 178.7 163 55.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 4.8e-43 178.3 168 54.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.8e-43 178.3 168 53.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 4.8e-43 178.3 164 54.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.3e-43 177.9 171 55.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 6.3e-43 177.9 168 53.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 8.2e-43 177.6 168 53.0
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 8.2e-43 177.6 173 52.6
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.1e-42 177.2 168 53.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.1e-42 177.2 167 55.1
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.4e-42 176.8 173 53.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.4e-42 176.8 168 53.6
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.8e-42 176.4 169 52.7
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.8e-42 176.4 168 51.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.4e-42 176.0 172 52.9
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 3.1e-42 175.6 169 54.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.1e-42 175.6 165 52.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.1e-42 175.6 168 52.4
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 6.9e-42 174.5 168 52.4
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 6.9e-42 174.5 167 55.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 9.0e-42 174.1 166 53.0
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.2e-41 173.7 166 52.4
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.2e-41 173.7 166 53.0
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.5e-41 173.3 164 56.1
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.5e-41 173.3 168 53.6
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-41 173.3 167 55.1
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.5e-41 173.3 169 49.7
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.0e-41 172.9 168 55.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.0e-41 172.9 169 54.4
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.0e-41 172.9 162 54.3
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.6e-41 172.6 170 52.4
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.4e-41 172.2 164 54.3
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 3.4e-41 172.2 164 56.1
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.5e-41 171.8 164 54.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.9e-41 171.4 164 53.0
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 5.9e-41 171.4 171 50.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 5.9e-41 171.4 171 52.0
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 5.9e-41 171.4 164 55.5
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 7.6e-41 171.0 164 55.5
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.0e-40 170.6 166 54.2
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-40 170.2 168 51.2
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.7e-40 169.9 166 53.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.7e-40 169.9 169 49.7
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.2e-40 169.5 168 51.8
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.2e-40 169.5 166 54.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.2e-40 169.5 164 53.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 2.9e-40 169.1 166 53.6
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 3.8e-40 168.7 169 50.9
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 6.5e-40 167.9 167 49.7
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 6.5e-40 167.9 164 50.6
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.1e-39 167.2 165 53.3
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.1e-39 167.2 170 50.0
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.4e-39 166.8 168 51.2
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.9e-39 166.4 168 50.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.5e-39 166.0 172 49.4
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.5e-39 166.0 169 50.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.5e-39 166.0 168 48.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.5e-39 166.0 166 50.0
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.5e-39 164.9 168 50.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 9.3e-39 164.1 166 50.6
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-38 163.7 172 51.7
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-38 163.7 172 51.7
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 3.6e-38 162.2 161 52.2
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 7.9e-38 161.0 166 49.4
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 7.9e-38 161.0 172 50.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-37 160.6 161 52.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.1e-37 158.3 165 49.1
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 5.1e-37 158.3 166 48.2
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.7e-37 157.9 170 48.8
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 8.8e-37 157.5 157 49.0
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 8.8e-37 157.5 170 51.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 5.7e-36 154.8 159 48.4
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 7.4e-36 154.5 160 50.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 9.7e-36 154.1 165 49.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 9.7e-36 154.1 170 49.4
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.7e-35 153.3 163 49.7
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.7e-35 153.3 170 48.8
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 6.3e-35 151.4 180 45.6
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 6.3e-35 151.4 166 48.2
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 6.3e-35 151.4 114 61.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.8e-34 149.8 165 50.3
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.8e-34 149.8 162 46.9
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.4e-34 149.4 110 64.5
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.4e-34 149.4 169 49.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-33 146.7 165 47.9
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.5e-33 146.7 168 49.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.0e-33 146.4 173 46.2
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 2.6e-33 146.0 165 47.3
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 7.7e-33 144.4 166 45.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.0e-32 144.1 169 45.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 8.5e-32 141.0 169 45.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 7.2e-31 137.9 109 56.0
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.6e-30 136.7 161 47.8
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.6e-30 136.7 165 43.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 4.7e-30 135.2 109 56.9
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.1e-30 134.8 136 47.8
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.1e-30 134.8 111 58.6
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-29 133.3 154 49.4
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-29 133.3 154 49.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.3e-29 132.9 169 43.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.3e-29 132.9 158 47.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.7e-28 128.3 87 63.2
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 6.9e-26 121.3 142 45.8
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 9.1e-26 120.9 108 50.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.6e-25 119.4 150 42.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.5e-25 118.6 158 41.8
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 7.7e-25 117.9 155 41.9
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.9e-24 115.9 164 36.6
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.8e-24 115.5 164 40.2
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-22 109.0 165 35.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-22 109.0 159 38.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-20 103.6 161 37.9
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.3e-20 102.4 155 36.1
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.5e-15 85.1 177 34.5
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.7e-12 75.1 150 32.0
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.7e-11 73.6 88 39.8


User provided reference genes

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