Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 3.6e-103 378.3 193 100.0
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 2.6e-64 249.2 203 68.5
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 1.3e-63 246.9 194 70.1
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 1.4e-62 243.4 203 67.5
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 2.0e-61 239.6 206 66.5
BcaB06g27734 Brassica carinata HOM05D011849 ORTHO05D001736 1.4e-57 226.9 201 63.7
BraA04t17188Z Brassica rapa HOM05D011849 ORTHO05D001736 6.7e-57 224.6 201 62.7
A04p15520 Brassica napus HOM05D011849 ORTHO05D001736 7.4e-56 221.1 201 62.2
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 1.7e-55 219.9 201 61.7
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 1.7e-55 219.9 201 61.7
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 1.7e-55 219.9 201 61.7
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 8.3e-47 191.0 193 58.5
AT5G39140 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 7.2e-35 151.4 157 59.2
AT5G39170 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 4.0e-33 145.6 159 59.7
Aa31LG9G16720 Aethionema arabicum HOM05D011849 ORTHO05D001736 7.3e-19 98.2 199 37.2
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.7e-13 79.7 212 32.1
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.1e-11 74.3 197 36.5
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 5.6e-11 72.0 144 39.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.8e-10 69.7 93 47.3
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.6e-10 69.3 207 32.4
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 4.7e-10 68.9 232 30.2
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 4.7e-10 68.9 174 37.4
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 6.2e-10 68.6 235 31.1
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 8.1e-10 68.2 142 36.6
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.1e-09 67.8 203 34.0
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.1e-09 67.8 118 43.2
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.4e-09 67.4 142 37.3
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.8e-09 67.0 165 37.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.8e-09 67.0 158 36.1
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.8e-09 67.0 151 38.4
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 3.1e-09 66.2 157 36.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 4.0e-09 65.9 64 59.4
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 5.2e-09 65.5 142 35.9
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 5.2e-09 65.5 55 56.4
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 6.8e-09 65.1 233 28.8
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 8.9e-09 64.7 135 37.8
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 8.9e-09 64.7 60 51.7
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 1.2e-08 64.3 188 31.4
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 1.5e-08 63.9 220 31.8
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 1.5e-08 63.9 58 53.4
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 2.0e-08 63.5 60 51.7
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.6e-08 63.2 73 47.9
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.6e-08 63.2 202 29.2
PGSC0003DMG400012377 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.6e-08 63.2 249 30.1
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 3.4e-08 62.8 178 33.7
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 3.4e-08 62.8 246 27.6
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 3.4e-08 62.8 56 58.9
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 4.4e-08 62.4 225 29.8
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 4.4e-08 62.4 171 29.8
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 4.4e-08 62.4 58 55.2
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 4.4e-08 62.4 143 36.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.8e-08 62.0 59 55.9
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 5.8e-08 62.0 50 66.0
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 7.6e-08 61.6 211 29.9
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 7.6e-08 61.6 56 55.4
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 7.6e-08 61.6 149 36.2
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 9.9e-08 61.2 141 35.5
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 9.9e-08 61.2 53 54.7
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 9.9e-08 61.2 149 34.9
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.3e-07 60.8 140 33.6
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.3e-07 60.8 103 40.8
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.7e-07 60.5 207 34.8
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 1.7e-07 60.5 182 31.3
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.7e-07 60.5 64 53.1
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 1.7e-07 60.5 64 45.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.2e-07 60.1 142 35.9
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.2e-07 60.1 103 40.8
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 2.2e-07 60.1 90 40.0
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 2.2e-07 60.1 65 56.9
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.2e-07 60.1 56 55.4
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.2e-07 60.1 125 38.4
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 2.2e-07 60.1 76 46.1
A05p44960 Brassica napus HOM05D012214 ORTHO05D001736 2.9e-07 59.7 249 28.1
BraSC197t45807Z Brassica rapa HOM05D012214 ORTHO05D001736 2.9e-07 59.7 249 28.1
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 2.9e-07 59.7 177 35.0
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.7e-07 59.3 172 33.7
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 3.7e-07 59.3 192 29.2
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.7e-07 59.3 167 35.3
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 3.7e-07 59.3 136 36.8
Solyc03g059470.1 Solanum lycopersicum HOM05D003787 ORTHO05D001736 3.7e-07 59.3 236 30.1
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 4.9e-07 58.9 178 31.5
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 4.9e-07 58.9 142 35.9
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.9e-07 58.9 199 29.6
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 4.9e-07 58.9 219 28.8
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 4.9e-07 58.9 56 57.1
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 6.4e-07 58.5 206 32.0
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 6.4e-07 58.5 168 33.3
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 8.4e-07 58.2 42 61.9
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 8.4e-07 58.2 195 28.7
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 8.4e-07 58.2 43 65.1
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 8.4e-07 58.2 55 60.0
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 8.4e-07 58.2 54 51.9
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 8.4e-07 58.2 209 30.6
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 8.4e-07 58.2 190 31.1
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 1.1e-06 57.8 57 52.6
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.1e-06 57.8 106 39.6
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 1.1e-06 57.8 58 51.7
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 1.1e-06 57.8 153 34.6
BcaC05g30326 Brassica carinata HOM05D012214 ORTHO05D001736 1.4e-06 57.4 223 29.1
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.4e-06 57.4 167 35.3
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 1.4e-06 57.4 167 35.3
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 1.4e-06 57.4 94 40.4
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.9e-06 57.0 163 33.7
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 1.9e-06 57.0 54 53.7
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 1.9e-06 57.0 94 38.3
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.9e-06 57.0 53 60.4
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.4e-06 56.6 148 37.8
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.4e-06 56.6 81 49.4
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.4e-06 56.6 210 29.0
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 3.2e-06 56.2 60 55.0
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.2e-06 56.2 250 29.6
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.2e-06 56.2 61 49.2
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 3.2e-06 56.2 100 39.0
CAN.G83.4 Capsicum annuum HOM05D003787 ORTHO05D001736 4.1e-06 55.8 82 48.8
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.1e-06 55.8 92 42.4
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 4.1e-06 55.8 156 33.3
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 4.1e-06 55.8 206 27.2
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 4.1e-06 55.8 67 49.3
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 4.1e-06 55.8 49 55.1
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 4.1e-06 55.8 64 48.4
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 4.1e-06 55.8 208 30.8
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 4.1e-06 55.8 42 59.5
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.1e-06 55.8 52 57.7
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 5.4e-06 55.5 53 56.6
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 5.4e-06 55.5 207 29.0
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 5.4e-06 55.5 193 32.1
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 5.4e-06 55.5 46 54.3
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 5.4e-06 55.5 205 31.2
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 9.2e-06 54.7 197 29.4
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 9.2e-06 54.7 143 37.8
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 9.2e-06 54.7 161 36.0
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 9.2e-06 54.7 169 32.5
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 9.2e-06 54.7 200 32.5


User provided reference genes

Program Settings