Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 5.4e-60 234.2 122 100.0
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 1.0e-34 150.2 118 71.2
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.5e-30 136.3 118 70.3
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 8.4e-29 130.6 120 66.7
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 1.1e-28 130.2 120 65.8
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 3.5e-27 125.2 120 63.3
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 3.5e-27 125.2 120 62.5
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 3.5e-27 125.2 120 63.3
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 3.5e-27 125.2 120 63.3
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 3.5e-27 125.2 120 62.5
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 6.0e-27 124.4 130 64.6
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 8.7e-26 120.6 122 64.8
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 6.6e-18 94.4 126 51.6
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 9.6e-17 90.5 126 47.6
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.4e-15 86.7 116 55.2
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.3e-13 80.1 116 45.7
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 6.4e-13 77.8 111 49.5
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 3.2e-12 75.5 111 48.6
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 1.0e-10 70.5 114 48.2
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 1.3e-10 70.1 100 45.0
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 2.5e-09 65.9 75 48.0
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 1.3e-08 63.5 98 41.8
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 1.3e-08 63.5 78 46.2
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 1.6e-08 63.2 78 46.2
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 2.8e-08 62.4 93 45.2
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 4.8e-08 61.6 81 43.2
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 6.2e-08 61.2 77 45.5
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 6.2e-08 61.2 80 42.5
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 8.1e-08 60.8 74 45.9
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 8.1e-08 60.8 74 45.9
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 8.1e-08 60.8 74 45.9
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 8.1e-08 60.8 115 39.1
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 1.1e-07 60.5 115 39.1
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 1.4e-07 60.1 72 45.8
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.4e-07 60.1 76 51.3
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.8e-07 59.7 100 38.0
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.8e-07 59.7 74 44.6
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 2.4e-07 59.3 78 43.6
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 2.4e-07 59.3 108 37.0
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 3.1e-07 58.9 117 36.8
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 3.1e-07 58.9 76 47.4
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 3.1e-07 58.9 87 43.7
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 4.0e-07 58.5 74 44.6
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 4.0e-07 58.5 115 37.4
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 4.0e-07 58.5 102 36.3
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 4.0e-07 58.5 105 40.0
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 5.3e-07 58.2 117 36.8
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 5.3e-07 58.2 115 38.3
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 5.3e-07 58.2 73 43.8
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 6.9e-07 57.8 97 42.3
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 9.0e-07 57.4 82 40.2
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 9.0e-07 57.4 112 36.6
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 1.2e-06 57.0 82 42.7
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 1.2e-06 57.0 69 49.3
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 1.2e-06 57.0 74 43.2
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 1.5e-06 56.6 105 41.0
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 1.5e-06 56.6 93 39.8
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 2.0e-06 56.2 75 48.0
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 2.0e-06 56.2 88 43.2
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 2.6e-06 55.8 97 40.2
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 2.6e-06 55.8 73 46.6
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 3.4e-06 55.5 72 43.1
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 4.5e-06 55.1 114 36.8
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 7.6e-06 54.3 78 46.2
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 1.0e-05 53.9 72 47.2
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 1.0e-05 53.9 121 38.0


User provided reference genes

Program Settings