Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3808.1 1918 100.0
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3433.3 1933 89.2
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3414.4 1927 89.2
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3387.4 1920 88.2
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3354.7 1924 88.0
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3337.0 1924 87.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3323.1 1932 87.2
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3315.0 1942 86.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3313.1 1952 86.2
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3307.3 1951 86.0
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3304.6 1928 86.7
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 3108.9 1968 80.0
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3090.4 1794 87.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2855.9 1937 74.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2251.9 1950 58.6
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2228.4 1960 58.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2224.9 1971 58.1
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2208.7 1955 57.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2204.1 2017 56.7
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2201.8 1957 57.7
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2194.9 1952 57.5
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2184.5 1953 57.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2183.7 1944 57.7
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2182.9 1950 57.6
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2182.5 1972 56.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2169.8 1946 56.9
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2167.9 1979 57.2
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2165.2 1958 56.7
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2152.9 1951 57.0
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2124.7 1952 56.5
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2122.8 1951 56.4
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2118.6 1961 56.0
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2112.4 1962 56.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2109.7 1957 55.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2107.4 1937 56.4
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2081.2 1958 55.2
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2075.4 1943 55.6
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2075.4 1942 55.5
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2067.7 1940 55.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2063.1 2150 51.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 1957 54.8
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2057.3 1940 55.5
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2053.5 1952 54.6
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2050.8 1922 55.7
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2041.9 1846 56.5
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2036.2 2155 50.8
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2031.1 1962 54.1
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2028.8 1957 54.0
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2025.0 1986 53.3
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 1955 54.7
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2014.2 1965 53.5
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2011.5 1955 53.1
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2011.5 1968 53.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2003.8 2136 51.1
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2002.3 1964 53.3
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1998.0 1976 53.2
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 1941 53.1
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1991.9 1797 56.3
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1984.1 2260 48.5
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1978.4 1946 53.8
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1972.6 1818 55.5
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1958.3 1958 53.1
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1954.1 1944 52.2
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1952.9 1933 53.5
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1947.9 1961 52.1
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1947.9 1961 51.6
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1931.4 1960 51.2
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1927.5 1952 51.8
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1894.0 1595 60.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1890.5 1946 51.3
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1884.0 1955 51.5
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1883.6 1944 51.5
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1862.0 1920 51.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1820.1 1946 50.7
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1816.2 1980 49.5
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1802.3 1921 49.2
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1743.4 1992 46.9
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1531.9 1180 64.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1431.0 1276 57.3
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1354.3 1820 41.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1353.2 1267 55.6
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1231.5 1986 37.7
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1225.7 2038 36.6
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1199.9 1081 57.9
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1138.3 1423 45.2
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1124.0 2013 34.7
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1096.3 991 55.8
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.6e-299 1032.3 1169 49.5
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.0e-285 988.0 2132 32.3
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.3e-253 881.3 1122 45.1
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.0e-250 869.8 762 57.5
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.9e-236 824.3 1011 44.5
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.8e-235 820.5 953 47.8
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 5.8e-225 786.2 521 78.1
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.3e-216 755.7 977 44.5
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 4.1e-215 753.4 887 47.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.4e-210 738.4 778 51.3
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.0e-165 587.8 496 61.1
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 3.0e-157 561.2 655 47.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 6.3e-155 553.5 523 52.4
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 7.2e-143 513.5 523 51.1
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.9e-128 464.9 648 41.5
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.9e-123 448.4 393 57.8
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.4e-122 445.3 335 71.0
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.3e-120 438.7 450 49.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 4.3e-119 434.5 291 72.5
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.8e-116 424.1 432 49.5
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 4.6e-105 387.9 841 32.1
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-95 356.3 224 76.3
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.1e-85 322.0 258 59.7
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 7.6e-84 317.4 338 50.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 9.9e-84 317.0 378 44.4
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.2e-59 236.1 265 50.6
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.8e-54 218.4 316 41.8
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-50 206.8 192 55.2
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.5e-50 206.1 192 54.2
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.0e-48 200.7 288 45.5
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 5.7e-47 194.9 520 28.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.2e-46 193.0 334 38.3
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.1e-45 189.1 293 37.2
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.1e-45 187.6 235 48.9
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 7.4e-39 167.9 188 52.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.1e-37 162.2 125 65.6
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.7e-35 156.8 281 38.1
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 4.2e-34 152.1 165 47.9
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.7e-33 148.7 141 50.4
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.0e-29 134.8 96 70.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.2e-26 125.9 291 32.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.5e-26 125.2 93 67.7
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-23 117.5 107 57.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.5e-23 117.1 291 30.9
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.5e-23 117.1 193 39.4
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 4.4e-23 115.5 99 54.5
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 3.7e-22 112.5 220 35.5
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 7.0e-21 108.2 120 47.5
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.0e-21 108.2 144 47.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 9.1e-21 107.8 118 47.5
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.7e-19 103.6 162 40.1
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.8e-19 102.4 89 56.2
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.8e-19 102.4 89 56.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 8.5e-19 101.3 116 50.0
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 8.5e-19 101.3 116 50.0
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 8.5e-19 101.3 89 55.1
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.9e-18 100.1 137 42.3
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 9.5e-18 97.8 145 44.1
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 2.7e-17 96.3 208 29.8
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 5.2e-16 92.0 134 43.3
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.7e-14 87.0 107 42.1
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.4e-13 84.0 88 45.5
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 3.8e-11 75.9 56 69.6
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 3.8e-11 75.9 49 67.3
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.1e-10 74.3 72 45.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.7e-09 68.9 126 35.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.1e-09 68.6 88 43.2
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-07 63.5 51 54.9
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 2.0e-07 63.5 93 38.7
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 7.5e-07 61.6 105 34.3


User provided reference genes

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