Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-168 596.7 346 100.0
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.8e-76 288.5 365 53.4
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.9e-74 283.1 378 54.2
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-72 277.7 361 55.1
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.6e-71 271.9 378 51.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.3e-70 269.2 351 53.8
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-67 261.2 375 48.3
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 6.4e-66 255.4 358 49.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-62 244.2 359 47.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-62 244.2 359 47.4
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 8.9e-60 235.0 348 48.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 8.9e-60 235.0 348 48.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 8.9e-60 235.0 348 48.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.2e-58 230.3 349 47.3
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.9e-58 229.2 353 46.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.1e-56 223.8 361 46.5
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-55 220.3 361 48.5
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-55 220.3 361 48.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-54 216.1 347 44.4
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.6e-54 214.9 307 48.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.2e-53 212.2 409 41.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-46 191.0 357 42.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.8e-37 160.2 383 33.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.7e-37 159.8 383 33.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.2e-35 154.8 383 33.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.2e-34 150.6 383 36.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.4e-33 147.9 364 36.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.5e-33 147.1 365 34.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.5e-33 147.1 404 33.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 5.5e-33 146.0 365 34.8
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 9.3e-33 145.2 156 51.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-32 144.8 385 35.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 3.5e-32 143.3 353 35.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.6e-32 142.9 381 35.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 7.9e-32 142.1 396 33.1
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 7.9e-32 142.1 361 35.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.9e-32 142.1 386 37.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.0e-31 141.7 369 35.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.3e-31 141.4 358 33.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.3e-31 141.4 359 32.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-31 141.4 369 34.7
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.8e-31 141.0 383 35.5
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.8e-31 141.0 166 48.8
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.3e-31 140.6 358 31.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-31 140.6 166 48.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.0e-31 140.2 377 32.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.1e-31 139.4 367 34.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 5.1e-31 139.4 109 62.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.7e-31 139.0 358 33.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-30 138.3 366 32.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.5e-30 137.9 391 32.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-30 137.5 370 33.8
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.3e-30 136.3 356 33.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.3e-30 136.3 119 59.7
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 7.4e-30 135.6 394 31.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 7.4e-30 135.6 383 30.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.6e-30 135.2 110 60.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.6e-29 134.4 367 32.2
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.7e-29 133.3 361 33.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.7e-29 133.3 367 33.2
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 3.7e-29 133.3 116 57.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.8e-29 132.9 109 59.6
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 6.2e-29 132.5 361 30.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.2e-29 132.5 120 55.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 8.2e-29 132.1 120 55.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.2e-29 132.1 414 33.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.2e-29 132.1 120 54.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-28 131.3 107 60.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-28 131.3 115 55.7
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-28 131.3 109 58.7
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-28 131.3 361 32.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.4e-28 131.3 295 33.2
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.4e-28 131.3 111 63.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.1e-28 130.2 109 59.6
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 4.0e-28 129.8 383 30.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 9.0e-28 128.6 182 42.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.0e-28 128.6 111 55.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.0e-28 128.6 366 34.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.2e-27 128.3 166 42.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.0e-27 127.5 352 32.4
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-27 127.1 369 32.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.4e-27 126.7 122 52.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.5e-27 126.3 360 31.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 5.8e-27 125.9 370 36.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 7.6e-27 125.6 375 34.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.0e-26 125.2 122 52.5
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.0e-26 125.2 109 54.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.3e-26 124.8 358 35.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-26 124.8 110 57.3
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-26 124.8 109 55.0
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.3e-26 124.8 104 60.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.7e-26 124.4 367 32.4
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.2e-26 124.0 360 34.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.9e-26 123.6 307 33.2
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.9e-26 123.6 102 59.8
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.9e-26 123.6 368 30.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.8e-26 123.2 110 56.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.8e-26 123.2 110 56.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.9e-26 122.9 260 33.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.5e-26 122.5 116 54.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 8.4e-26 122.1 395 30.6
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.1e-25 121.7 334 31.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-25 121.7 102 58.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.4e-25 121.3 109 56.0
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-25 121.3 122 51.6
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.9e-25 120.9 385 33.5
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.5e-25 120.6 169 41.4
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.2e-25 120.2 119 52.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 7.1e-25 119.0 107 57.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 9.3e-25 118.6 92 63.0
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-24 118.2 161 44.1
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.2e-24 118.2 107 57.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-24 117.9 354 33.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.6e-24 117.9 122 50.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-24 116.7 108 56.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.0e-24 115.9 104 58.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.9e-23 113.2 285 33.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.9e-23 113.2 414 28.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.1e-23 112.8 356 32.3
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.7e-23 112.1 384 29.7
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-22 111.7 366 29.2
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.9e-22 110.9 101 56.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.5e-22 110.5 111 56.8
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.5e-22 110.5 111 56.8
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.3e-22 110.2 111 55.9
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 3.3e-22 110.2 111 55.9
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 3.3e-22 110.2 111 55.9
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.3e-22 110.2 101 56.4
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 4.3e-22 109.8 377 34.0
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.3e-22 109.8 107 57.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 9.7e-22 108.6 107 55.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.3e-21 108.2 366 28.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.3e-21 108.2 423 28.8
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.7e-21 106.7 113 48.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.7e-21 106.7 113 48.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.8e-21 106.3 123 48.8
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.4e-20 104.0 379 29.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 4.1e-20 103.2 108 51.9
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.9e-20 102.4 121 46.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.2e-19 101.7 113 48.7
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.2e-19 101.7 108 45.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.5e-19 101.3 112 50.0
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-19 101.3 122 45.9
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.5e-19 101.3 122 45.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.0e-19 100.9 108 50.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 5.9e-19 99.4 338 30.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 7.7e-19 99.0 110 50.9
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.1e-17 95.1 248 31.5
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-17 94.4 88 54.5
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.2e-17 93.2 113 42.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.1e-16 89.4 73 65.8
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.4e-15 88.2 64 60.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.4e-15 88.2 64 60.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.8e-15 87.8 84 47.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.8e-15 87.8 69 59.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.0e-15 87.0 128 41.4
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.9e-15 86.7 109 46.8
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.9e-15 86.7 126 42.9
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 8.8e-15 85.5 107 37.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-14 84.3 361 28.5
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.5e-14 84.0 374 29.9
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.7e-14 82.8 73 61.6
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.2e-13 79.0 313 27.2
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 5.3e-12 76.3 99 40.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-10 71.2 119 41.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.9e-09 67.8 101 38.6
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 7.9e-08 62.4 97 35.1
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.4e-07 61.6 98 36.7
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 4.4e-06 56.6 135 34.8
BolC1t02621H Brassica oleracea HOM05D000032 ORTHO05D024508 5.7e-06 56.2 48 66.7
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.7e-06 56.2 84 36.9
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.4e-06 55.8 84 35.7
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 9.7e-06 55.5 97 32.0


User provided reference genes

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