Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR258980 Cardamine hirsuta HOM05D007630 ORTHO05D009637 1.0e-131 473.4 243 100.0
AT5G49800 Arabidopsis thaliana HOM05D007630 ORTHO05D009637 1.5e-114 416.4 243 85.6
AL8G23760 Arabidopsis lyrata HOM05D007630 ORTHO05D009637 8.3e-113 410.6 242 86.0
Sp6g11150 Schrenkiella parvula HOM05D007630 ORTHO05D009637 8.3e-113 410.6 243 86.0
Carub.0008s0968 Capsella rubella HOM05D007630 ORTHO05D009637 1.5e-109 399.8 243 83.1
Aa31sc192G10 Aethionema arabicum HOM05D007630 ORTHO05D009637 3.4e-106 388.7 237 83.5
TWI59G0438 Tripterygium wilfordii HOM05D007630 ORTHO05D009637 8.4e-97 357.5 236 75.0
THA.LOC104809043 Tarenaya hassleriana HOM05D007630 ORTHO05D009637 7.8e-95 350.9 239 75.7
Atru.chr6.70 Acer truncatum HOM05D007630 ORTHO05D009637 3.9e-94 348.6 233 74.2
Manes.06G015300 Manihot esculenta HOM05D007630 ORTHO05D009637 6.6e-94 347.8 236 72.9
Ciclev10002337m.g Citrus clementina HOM05D007630 ORTHO05D009637 8.7e-94 347.4 236 73.7
Cpa.g.sc246.13 Carica papaya HOM05D007630 ORTHO05D009637 4.3e-93 345.1 235 74.5
Potri.004G231000 Populus trichocarpa HOM05D007630 ORTHO05D009637 1.3e-92 343.6 239 73.2
Sabra01G0176100 Salix brachista HOM05D007630 ORTHO05D009637 2.8e-92 342.4 234 73.5
Actinidia17707 Actinidia chinensis HOM05D007630 ORTHO05D009637 4.8e-92 341.7 235 73.2
Hma1.2p1_0157F.1_g069300 Hydrangea macrophylla HOM05D007630 ORTHO05D009637 4.8e-92 341.7 232 73.7
GSVIVG01023115001 Vitis vinifera HOM05D007630 ORTHO05D009637 6.2e-92 341.3 236 72.9
Actinidia11717 Actinidia chinensis HOM05D007630 ORTHO05D009637 1.1e-91 340.5 235 71.9
Haze_09954 Corylus avellana HOM05D007630 ORTHO05D009637 6.9e-91 337.8 225 74.2
Rhsim11G0114600 Rhododendron simsii HOM05D007630 ORTHO05D009637 6.9e-91 337.8 235 72.8
QL02p103828 Quercus lobata HOM05D007630 ORTHO05D009637 1.2e-90 337.0 234 71.8
TPR.G5932 Trifolium pratense HOM05D007630 ORTHO05D009637 1.5e-90 336.7 237 71.7
CSS0024546 Camellia sinensis var. sinensis HOM05D007630 ORTHO05D009637 2.6e-90 335.9 236 71.6
Nn5g27111 Nelumbo nucifera HOM05D007630 ORTHO05D009637 2.6e-90 335.9 235 71.5
Lj4g0008184 Lotus japonicus HOM05D007630 ORTHO05D009637 3.4e-90 335.5 231 73.2
vmacro01631 Vaccinium macrocarpon HOM05D007630 ORTHO05D009637 4.5e-90 335.1 229 74.2
COL.COLO4_31101 Corchorus olitorius HOM05D007630 ORTHO05D009637 1.3e-89 333.6 241 71.8
Glyma.07G270900 Glycine max HOM05D007630 ORTHO05D009637 2.2e-89 332.8 235 70.6
Phvul.003G090300 Phaseolus vulgaris HOM05D007630 ORTHO05D009637 2.9e-89 332.4 235 71.5
Psat4g001800 Pisum sativum HOM05D007630 ORTHO05D009637 2.9e-89 332.4 230 72.6
Glyma.17G003000 Glycine max HOM05D007630 ORTHO05D009637 4.9e-89 331.6 235 71.1
Thecc.06G066000 Theobroma cacao HOM05D007630 ORTHO05D009637 4.9e-89 331.6 235 71.1
Lalb_Chr07g0176861 Lupinus albus HOM05D007630 ORTHO05D009637 6.4e-89 331.3 234 70.5
Medtr4g134400 Medicago truncatula HOM05D007630 ORTHO05D009637 1.9e-88 329.7 229 72.9
CSS0032395 Camellia sinensis var. sinensis HOM05D007630 ORTHO05D009637 2.4e-88 329.3 225 72.4
Duzib192G0579 Durio zibethinus HOM05D007630 ORTHO05D009637 9.3e-88 327.4 229 72.5
MSTRG.16453 Avicennia marina HOM05D007630 ORTHO05D009637 1.2e-87 327.0 238 69.3
Lj9A243T50 Lonicera japonica HOM05D007630 ORTHO05D009637 1.6e-87 326.6 236 70.3
RcHm_v2.0_Chr7g0218271 Rosa chinensis HOM05D007630 ORTHO05D009637 1.6e-87 326.6 241 68.9
CANSAT01G1787 Cannabis sativa HOM05D007630 ORTHO05D009637 2.7e-87 325.9 239 71.1
Prupe.1G587600 Prunus persica HOM05D007630 ORTHO05D009637 4.6e-87 325.1 245 67.8
arahy.Tifrunner.gnm1.ann1.CDQ02R Arachis hypogaea HOM05D007630 ORTHO05D009637 7.9e-87 324.3 252 66.7
arahy.Tifrunner.gnm1.ann1.XQ55VB Arachis hypogaea HOM05D007630 ORTHO05D009637 7.9e-87 324.3 252 66.7
FvH4_5g27180 Fragaria vesca HOM05D007630 ORTHO05D009637 1.3e-86 323.6 241 68.5
Peaxi162Scf00194g00929 Petunia axillaris HOM05D007630 ORTHO05D009637 1.3e-86 323.6 239 69.0
DCAR_001874 Daucus carota HOM05D007630 ORTHO05D009637 1.8e-86 323.2 231 70.1
FAN04G2951 Fragaria x ananassa HOM05D007630 ORTHO05D009637 1.8e-86 323.2 241 68.0
Cc02_g23840 Coffea canephora HOM05D007630 ORTHO05D009637 2.3e-86 322.8 235 68.1
Migut.B00699 Erythranthe guttata HOM05D007630 ORTHO05D009637 3.0e-86 322.4 242 67.4
PGSC0003DMG400018220 Solanum tuberosum HOM05D007630 ORTHO05D009637 5.1e-86 321.6 235 68.9
CAN.G1379.16 Capsicum annuum HOM05D007630 ORTHO05D009637 6.7e-86 321.2 235 69.4
Solyc01g102720.3 Solanum lycopersicum HOM05D007630 ORTHO05D009637 8.7e-86 320.9 235 68.5
Sopen01g045140 Solanum pennellii HOM05D007630 ORTHO05D009637 1.1e-85 320.5 235 68.5
Hund29384 Selenicereus undatus HOM05D007630 ORTHO05D009637 1.5e-85 320.1 236 67.8
Hund29386 Selenicereus undatus HOM05D007630 ORTHO05D009637 1.5e-85 320.1 236 67.8
MD08G1250400 Malus domestica HOM05D007630 ORTHO05D009637 1.9e-85 319.7 232 69.0
AUR62040114 Chenopodium quinoa HOM05D007630 ORTHO05D009637 5.6e-85 318.2 236 68.2
FAN18G2712 Fragaria x ananassa HOM05D007630 ORTHO05D009637 1.6e-84 316.6 248 66.5
Nitab4.5_0006947g0030 Nicotiana tabacum HOM05D007630 ORTHO05D009637 2.1e-84 316.2 229 70.3
Gorai.011G090500 Gossypium raimondii HOM05D007630 ORTHO05D009637 2.8e-84 315.8 235 69.4
FAN13G2616 Fragaria x ananassa HOM05D007630 ORTHO05D009637 3.7e-84 315.5 248 66.1
PGR042G3439 Punica granatum HOM05D007630 ORTHO05D009637 6.2e-84 314.7 226 70.4
Oeu000167.1 Olea europaea HOM05D007630 ORTHO05D009637 8.1e-84 314.3 225 68.9
Gohir.A10G157500 Gossypium hirsutum HOM05D007630 ORTHO05D009637 1.8e-83 313.2 235 68.5
Nitab4.5_0001085g0080 Nicotiana tabacum HOM05D007630 ORTHO05D009637 1.8e-83 313.2 229 69.4
Gohir.A05G160300 Gossypium hirsutum HOM05D007630 ORTHO05D009637 2.4e-83 312.8 244 66.8
Gorai.009G168000 Gossypium raimondii HOM05D007630 ORTHO05D009637 2.4e-83 312.8 244 66.8
HanXRQChr16g0531021 Helianthus annuus HOM05D007630 ORTHO05D009637 4.0e-83 312.0 240 69.2
Eucgr.G00050 Eucalyptus grandis HOM05D007630 ORTHO05D009637 1.5e-82 310.1 234 68.8
ECA236G0298 Erigeron canadensis HOM05D007630 ORTHO05D009637 2.0e-82 309.7 245 68.6
Aqoxy6G00011 Aquilegia oxysepala HOM05D007630 ORTHO05D009637 7.6e-82 307.8 241 67.2
CDE05G2797 Ceratophyllum demersum HOM05D007630 ORTHO05D009637 3.9e-78 295.4 236 63.6
Lsat_1_v5_gn_9_82660 Lactuca sativa HOM05D007630 ORTHO05D009637 3.9e-78 295.4 260 61.9
ATR1089G051 Amborella trichopoda HOM05D007630 ORTHO05D009637 1.1e-77 293.9 235 66.4
Gohir.D10G083200 Gossypium hirsutum HOM05D007630 ORTHO05D009637 3.1e-75 285.8 235 64.7
CDE05G1783 Ceratophyllum demersum HOM05D007630 ORTHO05D009637 4.0e-75 285.4 236 61.0
VMungo1215G0090 Vigna mungo HOM05D007630 ORTHO05D009637 4.0e-75 285.4 214 69.2
PSO017G5941 Papaver somniferum HOM05D007630 ORTHO05D009637 8.4e-73 277.7 243 61.7
PSO170G3600 Papaver somniferum HOM05D007630 ORTHO05D009637 1.4e-72 276.9 243 61.3
SGA_v2.0_scaffold254G45223 Striga asiatica HOM05D007630 ORTHO05D009637 2.1e-71 273.1 231 61.0
AUR62032498 Chenopodium quinoa HOM05D007630 ORTHO05D009637 5.1e-70 268.5 203 66.5
Oeu043594.1 Olea europaea HOM05D007630 ORTHO05D009637 1.9e-69 266.5 171 75.4
TAR629G1327 Trochodendron aralioides HOM05D007630 ORTHO05D009637 3.7e-68 262.3 203 65.5
DCAR_028500 Daucus carota HOM05D007630 ORTHO05D009637 2.9e-65 252.7 199 65.8
SEGI_35985 Sequoiadendron giganteum HOM05D007630 ORTHO05D009637 2.5e-61 239.6 232 55.2
Os11g0245500 Oryza sativa ssp. japonica HOM05D007630 ORTHO05D009637 4.3e-61 238.8 245 53.9
Cfa004415 Carpinus fangiana HOM05D000089 ORTHO05D000104 7.7e-58 228.0 225 56.9
MBI06_g17062_MAGBIO Magnolia biondii HOM05D007630 ORTHO05D009637 1.9e-56 223.4 139 77.7
Mapoly0105s0042 Marchantia polymorpha HOM05D007630 ORTHO05D009637 1.8e-54 216.9 223 52.0
SMO198G0095 Selaginella moellendorffii HOM05D007630 ORTHO05D009637 4.5e-50 202.2 230 48.3
Dinv30982 Davidia involucrata HOM05D007630 ORTHO05D009637 1.0e-49 201.1 140 71.4
Gohir.D05G163000 Gossypium hirsutum HOM05D007630 ORTHO05D009637 2.1e-47 193.4 164 61.0
Sc03g0005590 Simmondsia chinensis HOM05D007630 ORTHO05D009637 2.8e-44 183.0 154 62.3
Zm00001eb168190 Zea mays HOM05D007630 ORTHO05D009637 3.7e-44 182.6 241 44.4
SEGI_15718 Sequoiadendron giganteum HOM05D007630 ORTHO05D009637 1.1e-24 117.9 220 34.1
MD15G1445600 Malus domestica HOM05D007630 ORTHO05D009637 1.9e-24 117.1 85 65.9
Dinv29656 Davidia involucrata HOM05D007630 ORTHO05D009637 4.9e-12 75.9 126 39.7
HanXRQChr09g0245071 Helianthus annuus HOM05D000066 ORTHO05D000055 1.2e-10 71.2 57 59.6


User provided reference genes

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