Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.9e-184 649.0 331 100.0
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.6e-146 523.1 344 81.1
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 6.0e-146 521.2 340 81.2
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 4.3e-144 515.0 337 80.7
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 6.6e-129 464.5 363 70.8
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 3.1e-126 455.7 352 71.3
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 2.1e-122 443.0 346 69.4
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 2.7e-122 442.6 346 69.4
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.5e-122 442.2 343 69.7
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 7.9e-122 441.0 349 69.6
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.7e-121 439.9 349 69.6
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 3.5e-114 415.6 367 64.0
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 4.5e-109 398.7 376 59.0
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 7.9e-106 387.9 241 80.5
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 3.9e-89 332.4 298 60.4
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.4e-86 323.9 285 62.1
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 5.3e-86 322.0 347 52.2
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.5e-85 318.9 268 61.6
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.8e-84 315.8 340 54.1
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 3.8e-84 315.8 243 65.0
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 1.4e-83 313.9 275 60.0
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.6e-82 310.5 286 58.7
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.0e-81 307.8 238 63.9
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.4e-81 307.4 256 61.7
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.1e-81 305.4 239 64.4
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.1e-80 304.3 343 51.6
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 2.0e-80 303.5 263 60.5
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.6e-80 303.1 363 51.0
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.3e-80 302.8 361 50.4
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 4.4e-80 302.4 250 63.6
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 4.4e-80 302.4 283 59.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 5.7e-80 302.0 295 55.9
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 5.7e-80 302.0 335 51.9
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 7.4e-80 301.6 233 64.8
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.7e-79 300.4 367 50.4
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.7e-79 300.4 233 64.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 2.8e-79 299.7 291 57.4
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.7e-79 299.3 247 65.6
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.7e-79 299.3 238 62.2
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 3.7e-79 299.3 335 49.3
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 4.8e-79 298.9 251 62.5
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 8.2e-79 298.1 281 56.9
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.1e-78 297.7 246 62.2
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.4e-78 297.4 391 47.8
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.4e-78 297.4 335 51.9
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.4e-78 297.4 286 56.3
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 2.4e-78 296.6 362 49.4
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 2.4e-78 296.6 384 46.6
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 2.4e-78 296.6 241 62.7
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 4.1e-78 295.8 247 60.3
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 4.1e-78 295.8 268 57.8
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 5.3e-78 295.4 289 54.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.0e-77 293.5 313 52.7
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.6e-77 293.1 313 52.7
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 3.5e-77 292.7 351 49.9
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 4.5e-77 292.4 311 54.0
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 1.0e-76 291.2 336 51.5
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 5.0e-76 288.9 280 54.3
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 6.5e-76 288.5 315 51.7
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 2.5e-75 286.6 241 61.4
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 3.2e-75 286.2 321 51.1
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 3.2e-75 286.2 303 55.1
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 4.2e-75 285.8 238 60.1
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 7.2e-75 285.0 249 60.2
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 9.4e-75 284.6 278 54.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.6e-74 283.9 306 52.3
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.6e-74 283.9 312 51.0
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 2.7e-74 283.1 321 51.1
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 3.6e-74 282.7 237 61.2
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 3.6e-74 282.7 312 52.6
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 8.0e-74 281.6 326 51.8
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 8.0e-74 281.6 326 51.8
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.0e-73 281.2 237 60.8
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.4e-73 280.8 319 53.3
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.4e-73 280.8 243 58.0
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 4.0e-73 279.3 238 57.6
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.1e-72 277.7 241 56.0
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 2.0e-72 276.9 282 52.5
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.6e-72 276.6 339 49.9
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.3e-72 276.2 326 50.9
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 3.3e-72 276.2 283 55.5
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.7e-72 275.4 243 56.4
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 7.5e-72 275.0 296 51.0
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 6.3e-71 271.9 284 52.1
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.4e-70 270.8 315 47.3
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 4.1e-70 269.2 277 52.0
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 9.1e-70 268.1 239 59.4
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.6e-69 267.3 238 55.0
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.6e-69 267.3 241 56.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.0e-68 264.6 223 57.4
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.3e-68 264.2 301 51.8
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.3e-68 264.2 263 55.5
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 6.5e-68 261.9 238 55.0
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 8.5e-68 261.5 242 57.0
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.1e-67 261.2 246 54.5
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.5e-67 260.8 363 44.6
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 4.2e-67 259.2 207 65.7
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 5.5e-67 258.8 280 49.3
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.6e-66 257.3 248 53.2
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 4.7e-66 255.8 279 49.1
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 6.8e-65 251.9 249 50.6
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 6.8e-65 251.9 238 52.5
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 7.5e-64 248.4 250 52.0
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.8e-63 246.5 240 53.3
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.6e-61 240.7 322 43.5
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 2.0e-61 240.4 323 44.0
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.3e-60 237.7 167 70.7
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.2e-60 236.9 256 49.2
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.9e-59 233.8 286 46.2
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-56 224.2 236 49.2
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.6e-56 223.4 146 76.0
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.5e-53 212.6 252 51.2
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.2e-50 204.5 169 59.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.0e-49 201.4 145 72.4
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 5.2e-49 199.1 151 66.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.3e-47 194.5 138 66.7
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 7.0e-46 188.7 305 37.4
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-45 187.2 224 44.2
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 4.6e-45 186.0 128 75.0
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.5e-40 171.0 146 62.3
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.7e-39 167.5 235 42.6
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.4e-38 164.5 175 49.1
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 1.7e-36 157.5 193 47.7
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 3.9e-36 156.4 237 40.9
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 3.3e-35 153.3 303 36.0
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 3.3e-27 126.7 154 53.2
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 2.8e-26 123.6 111 56.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-24 117.9 129 47.3
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.9e-22 110.9 74 73.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 5.4e-22 109.4 120 48.3
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 7.8e-21 105.5 115 50.4
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 7.8e-21 105.5 109 51.4
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 3.4e-16 90.1 59 76.3
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 5.8e-16 89.4 67 68.7
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 7.6e-16 89.0 419 22.7
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 3.8e-15 86.7 52 73.1
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 6.4e-15 85.9 155 36.8
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.1e-14 85.1 59 69.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 1.4e-14 84.7 52 71.2
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.2e-14 83.2 69 62.3
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 7.1e-14 82.4 74 52.7
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 9.0e-09 65.5 81 46.9
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 7.6e-08 62.4 52 55.8
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 6.4e-07 59.3 51 49.0
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 4.2e-06 56.6 38 52.6


User provided reference genes

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