Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.6e-117 424.1 220 100.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.2e-111 405.2 220 94.5
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.2e-110 403.3 220 93.6
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 5.1e-109 397.9 220 91.8
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.6e-102 376.3 226 88.1
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.1e-102 375.9 226 87.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.0e-101 373.6 227 86.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-101 373.6 227 86.3
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.3e-101 373.2 226 87.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.3e-101 372.5 227 86.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 3.9e-101 371.7 226 86.3
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 8.7e-101 370.5 227 85.5
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.5e-100 369.8 226 87.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.5e-100 369.8 227 85.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.3e-100 367.5 223 86.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-98 362.8 228 83.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 7.1e-95 350.9 231 80.1
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.5e-89 331.6 228 75.4
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.4e-82 310.1 219 70.8
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.4e-82 310.1 219 70.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.8e-82 309.7 219 70.3
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.3e-80 303.5 222 68.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.7e-80 303.1 226 68.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 6.5e-80 301.2 226 67.7
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 8.4e-80 300.8 227 67.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 4.2e-79 298.5 222 67.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.1e-79 297.7 226 66.8
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.7e-78 295.8 222 67.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.9e-76 289.7 222 66.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.9e-76 289.7 227 64.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.5e-76 289.3 223 65.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 3.3e-76 288.9 220 66.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.7e-76 288.1 234 63.7
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.3e-75 287.0 226 64.6
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.6e-75 286.6 225 63.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 2.8e-75 285.8 163 89.0
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.7e-75 285.4 221 66.5
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 8.2e-75 284.3 221 65.6
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.4e-74 282.7 225 64.0
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.1e-74 282.3 217 65.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.1e-74 282.0 221 66.5
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 6.9e-74 281.2 221 63.8
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.2e-73 280.4 219 64.8
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.4e-73 278.9 221 62.9
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.5e-73 278.5 226 61.9
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 7.6e-73 277.7 214 64.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.0e-72 277.3 220 65.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.0e-72 277.3 233 60.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-72 276.9 221 62.4
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.7e-72 276.6 220 64.5
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.2e-72 276.2 219 62.6
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.9e-72 275.8 235 59.1
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.0e-72 275.0 242 57.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.5e-72 274.6 219 62.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.1e-71 273.9 222 61.7
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.9e-71 273.1 217 62.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 4.2e-71 271.9 230 61.3
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 5.5e-71 271.6 229 60.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.2e-71 271.2 216 64.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-70 270.4 223 59.6
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.1e-70 269.6 221 61.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-70 269.2 228 59.6
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.6e-70 268.9 227 59.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.6e-70 268.5 234 56.8
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.1e-70 268.1 230 58.7
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.3e-69 266.9 228 59.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.3e-69 266.9 234 56.8
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 3.0e-69 265.8 235 57.9
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.1e-69 265.0 219 63.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-68 263.8 227 59.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.9e-68 263.1 227 58.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.5e-68 262.7 234 59.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-68 262.3 218 61.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.3e-68 261.9 208 62.0
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-67 260.4 218 61.0
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.3e-67 260.4 221 59.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.2e-67 259.6 226 57.1
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 3.7e-67 258.8 212 62.7
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.7e-67 258.8 224 59.8
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 4.8e-67 258.5 223 59.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.8e-67 258.5 227 59.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.3e-67 258.1 230 57.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 6.3e-67 258.1 221 57.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 8.2e-67 257.7 224 58.9
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 8.2e-67 257.7 221 57.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.1e-66 257.3 231 55.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 2.4e-66 256.1 215 60.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 3.1e-66 255.8 218 60.6
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.1e-66 255.8 185 66.5
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 5.3e-66 255.0 226 56.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.9e-66 254.6 235 55.7
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.2e-65 253.8 222 59.5
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.0e-65 253.1 221 58.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.3e-64 250.4 221 58.8
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.7e-64 250.0 222 58.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.9e-64 249.2 227 57.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.9e-64 249.2 217 59.4
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 8.5e-64 247.7 258 53.1
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.9e-63 246.5 218 58.7
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 2.5e-63 246.1 222 57.2
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.2e-63 244.6 216 56.0
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.2e-62 243.8 222 57.2
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.2e-62 243.8 272 50.7
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.4e-61 240.4 230 53.0
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.4e-61 240.4 237 52.7
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 6.7e-61 238.0 221 57.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 8.8e-61 237.7 214 57.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 8.2e-59 231.1 222 53.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 9.1e-58 227.6 224 51.3
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.4e-57 225.7 228 53.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.2e-56 223.0 163 68.7
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.1e-55 220.7 244 48.0
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.2e-55 218.8 226 50.4
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.8e-53 213.4 247 46.2
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 3.9e-53 212.2 222 50.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.5e-52 210.3 161 67.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.7e-51 206.8 184 64.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.7e-51 206.8 213 52.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.1e-50 202.2 224 50.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.6e-49 200.3 162 65.4
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 5.0e-48 195.3 170 57.1
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.9e-47 193.4 176 56.8
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.2e-47 192.2 169 56.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.2e-46 190.7 145 66.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-46 190.7 154 64.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.7e-46 189.5 219 45.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.4e-45 187.2 141 68.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-44 182.6 218 49.5
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.8e-40 169.1 224 43.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 4.2e-39 165.6 145 58.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.0e-37 161.0 214 43.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.2e-35 153.3 217 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.3e-35 151.8 186 44.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-34 151.0 220 47.3
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.1e-34 149.4 192 42.7
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.0e-33 146.7 115 64.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 3.5e-33 146.0 116 64.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.0e-32 144.4 191 44.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.3e-32 144.1 115 63.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.1e-31 141.0 237 38.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 3.2e-31 139.4 218 35.3
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 8.0e-30 134.8 126 56.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.8e-29 131.7 141 50.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.2e-28 131.0 221 34.4
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 2.6e-28 129.8 144 45.8
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.3e-27 125.2 144 48.6
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-26 122.5 203 43.8
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-26 122.5 203 43.8
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.0e-24 115.5 90 64.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.8e-22 109.8 190 42.6
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.8e-21 107.1 220 39.1
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.0e-21 106.3 180 36.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-20 104.4 178 41.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.5e-20 104.0 98 54.1
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 3.7e-19 99.4 53 90.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 2.4e-18 96.7 52 88.5
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-18 96.3 53 88.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-18 96.3 53 88.7
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 3.5e-17 92.8 134 40.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 5.9e-17 92.0 151 36.4
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.3e-16 90.9 70 61.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.3e-16 90.1 58 77.6
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.3e-15 86.3 163 35.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.3e-15 86.3 84 52.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.3e-15 85.1 76 53.9
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.6e-14 82.8 75 57.3
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.6e-14 82.8 51 82.4
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.6e-14 82.8 82 51.2
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.6e-14 82.8 82 51.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-13 81.3 54 74.1
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-13 80.9 122 37.7
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 4.0e-13 79.3 68 54.4
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.0e-12 77.0 74 51.4
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 7.5e-12 75.1 86 44.2
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 6.4e-11 72.0 145 33.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.6e-09 67.4 82 40.2
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.7e-09 66.6 79 46.8
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 5.0e-08 62.4 53 56.6
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.3e-07 59.7 122 39.3
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.2e-06 57.8 70 40.0


User provided reference genes

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