Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.1e-157 557.4 270 100.0
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.0e-155 552.4 270 98.9
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.4e-155 551.2 270 98.5
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.8e-149 531.9 268 95.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 8.0e-149 530.4 270 94.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 3.7e-146 521.5 269 92.2
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.1e-141 505.8 294 84.0
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.3e-140 502.3 269 89.6
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 4.4e-139 498.0 273 89.7
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.5e-136 488.4 271 86.7
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 3.5e-136 488.4 272 86.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 4.6e-136 488.0 272 86.4
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.7e-135 486.1 272 86.0
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.9e-134 482.6 272 85.3
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.2e-133 479.9 272 84.9
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.7e-133 478.0 272 84.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.5e-126 456.4 268 79.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 9.6e-126 453.8 270 78.1
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.8e-124 449.5 274 78.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 4.0e-124 448.4 270 78.1
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.2e-123 446.8 270 77.0
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.6e-123 445.7 270 77.4
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.4e-123 445.3 270 78.5
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.4e-123 445.3 271 78.2
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.3e-122 443.4 270 76.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 4.9e-122 441.4 264 79.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.1e-121 440.3 260 78.8
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.2e-120 436.8 256 82.8
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.5e-120 435.3 265 76.6
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 7.8e-120 434.1 270 75.2
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.0e-119 433.7 278 75.5
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.3e-119 433.3 261 77.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.7e-119 433.0 253 78.3
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.3e-119 432.6 270 75.2
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 2.3e-119 432.6 278 75.2
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.0e-119 432.2 223 91.5
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 3.9e-119 431.8 270 75.6
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 5.1e-119 431.4 268 75.4
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.1e-119 431.4 257 79.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.7e-119 430.6 254 78.7
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-118 430.3 278 74.8
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-118 430.3 265 75.5
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.5e-118 429.9 260 77.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.5e-118 429.1 254 79.1
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.3e-118 428.7 278 74.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 3.3e-118 428.7 270 75.2
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.6e-118 427.2 258 76.0
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.1e-117 426.0 266 74.8
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.1e-117 426.0 266 74.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.1e-117 426.0 265 76.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.8e-117 425.6 261 75.1
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.8e-117 425.6 264 73.1
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 8.1e-117 424.1 256 78.9
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.1e-117 424.1 266 73.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.1e-116 423.7 264 73.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.4e-116 423.3 254 76.0
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.8e-116 422.9 266 74.8
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.4e-116 422.5 260 75.4
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.1e-116 422.2 239 81.6
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 4.0e-116 421.8 269 74.3
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 4.0e-116 421.8 270 74.1
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 5.3e-116 421.4 263 73.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 5.3e-116 421.4 260 75.0
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 6.9e-116 421.0 253 76.3
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 6.9e-116 421.0 270 75.9
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 6.9e-116 421.0 269 75.1
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 9.0e-116 420.6 265 74.7
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 9.0e-116 420.6 261 76.6
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.5e-115 419.9 268 72.4
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.5e-115 419.9 260 74.6
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.5e-115 419.9 261 75.5
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.4e-115 418.7 260 76.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 5.8e-115 417.9 268 72.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.9e-115 417.2 265 74.3
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 9.9e-115 417.2 271 73.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.7e-114 416.4 271 74.2
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.9e-114 414.8 270 71.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.4e-114 414.1 270 73.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.4e-113 413.3 247 78.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.2e-113 411.8 271 72.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.3e-113 410.6 266 72.6
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.2e-112 410.2 266 73.7
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.1e-112 409.5 264 74.6
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.8e-112 407.5 283 67.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.0e-111 407.1 242 79.8
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 1.3e-111 406.8 272 72.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.7e-111 406.4 258 76.0
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.0e-111 405.6 272 72.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.9e-111 405.2 281 67.6
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.1e-111 404.8 276 72.5
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 6.6e-111 404.4 275 69.5
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.5e-110 403.3 272 72.1
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.5e-110 402.5 258 73.6
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 2.5e-110 402.5 260 71.2
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.3e-110 401.7 279 69.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 7.3e-110 401.0 262 72.1
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.1e-108 397.1 259 70.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 3.1e-108 395.6 264 70.1
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.3e-106 390.2 269 70.3
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.9e-105 386.3 269 68.4
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.1e-104 382.9 291 64.9
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-103 380.2 250 71.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.3e-103 380.2 273 67.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 5.6e-102 374.8 230 75.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.6e-102 374.8 221 76.0
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 2.8e-101 372.5 270 68.1
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.1e-100 370.5 220 77.7
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.6e-99 365.9 260 68.5
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 2.9e-98 362.5 238 66.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.9e-97 359.8 231 69.3
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.5e-97 358.2 291 63.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 7.1e-97 357.8 231 69.3
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-94 350.1 227 66.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.3e-93 347.1 226 65.5
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.7e-93 345.5 228 71.5
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.2e-93 344.7 222 67.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.1e-92 342.0 235 64.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.2e-91 340.5 210 74.3
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.4e-89 333.6 300 56.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.3e-86 322.4 261 62.1
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-85 319.3 218 69.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.8e-85 319.3 193 73.6
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.4e-84 317.0 293 56.7
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.1e-84 315.5 330 51.2
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 4.1e-84 315.5 231 66.2
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.2e-81 304.7 169 79.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 5.1e-79 298.5 181 77.3
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.3e-77 291.6 198 65.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.1e-76 288.9 157 89.2
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 3.4e-75 285.8 218 55.5
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 6.5e-66 255.0 162 71.0
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.9e-58 229.6 247 52.6
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.8e-58 229.2 129 79.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 7.2e-57 224.9 163 67.5
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.7e-56 222.2 213 56.3
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.5e-50 201.8 123 78.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 9.1e-44 181.4 122 68.9
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.6e-27 127.5 79 78.5
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.0e-26 124.8 72 80.6
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 7.3e-25 118.6 81 70.4
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.2e-24 117.9 109 56.9
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 8.9e-23 111.7 65 83.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.6e-22 110.2 68 63.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.3e-21 107.8 65 70.8
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 7.8e-19 98.6 73 65.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.7e-18 97.4 90 56.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.5e-17 93.6 85 63.5
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.3e-17 92.8 61 77.0
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 4.3e-17 92.8 52 76.9
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.7e-13 80.9 55 70.9
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 1.4e-12 77.8 55 74.5
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 7.1e-12 75.5 74 48.6
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.5e-11 73.2 70 55.7
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.0e-11 72.4 55 61.8
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 5.1e-10 69.3 162 32.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.6e-08 63.2 59 54.2
A10p19720 Brassica napus HOM05D007647 ORTHO05D009644 5.2e-07 59.3 32 75.0
BraA10t44047Z Brassica rapa HOM05D007647 ORTHO05D009644 1.5e-06 57.8 32 78.1


User provided reference genes

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