Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 3.6e-46 188.3 131 100.0
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 1.3e-35 153.3 131 76.3
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 2.9e-35 152.1 129 82.2
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 3.8e-35 151.8 128 83.6
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 4.9e-35 151.4 131 77.1
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 1.7e-32 142.9 130 78.5
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 1.9e-31 139.4 129 74.4
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.3e-30 136.7 129 79.8
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.3e-30 136.7 129 79.8
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 1.6e-30 136.3 129 76.0
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 3.6e-30 135.2 129 79.1
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 3.6e-30 135.2 129 79.1
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 8.1e-30 134.0 128 80.5
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 2.9e-27 125.6 130 77.7
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 1.9e-23 112.8 138 65.9
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.1e-21 107.1 139 64.0
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 1.4e-21 106.7 134 58.2
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 4.0e-21 105.1 135 64.4
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 1.5e-20 103.2 142 54.9
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 2.0e-20 102.8 133 60.2
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 3.4e-20 102.1 133 62.4
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 1.7e-19 99.8 133 61.7
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.8e-19 98.6 128 66.4
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.8e-19 98.6 130 59.2
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 3.8e-19 98.6 130 65.4
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 3.8e-19 98.6 133 53.4
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 3.8e-19 98.6 145 57.9
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 4.9e-19 98.2 138 64.5
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 4.9e-19 98.2 138 64.5
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 8.4e-19 97.4 135 65.9
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 8.4e-19 97.4 135 65.9
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 2.5e-18 95.9 145 54.5
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 2.5e-18 95.9 132 54.5
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 3.2e-18 95.5 138 56.5
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 3.2e-18 95.5 137 62.0
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 3.2e-18 95.5 128 58.6
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 5.5e-18 94.7 133 60.9
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 7.1e-18 94.4 138 55.1
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 9.3e-18 94.0 132 53.8
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 1.6e-17 93.2 139 63.3
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 2.1e-17 92.8 138 60.1
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 2.1e-17 92.8 130 61.5
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 2.1e-17 92.8 133 65.4
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 6.0e-17 91.3 138 59.4
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 6.0e-17 91.3 142 59.9
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 1.8e-16 89.7 131 61.1
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 2.3e-16 89.4 138 63.0
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 3.9e-16 88.6 129 58.1
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 5.1e-16 88.2 119 61.3
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 5.1e-16 88.2 134 59.7
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 6.7e-16 87.8 138 60.9
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 1.5e-15 86.7 137 53.3
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 2.5e-15 85.9 133 50.4
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 2.5e-15 85.9 123 55.3
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 3.3e-15 85.5 130 56.2
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 7.4e-15 84.3 151 48.3
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 7.4e-15 84.3 128 62.5
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 1.3e-14 83.6 128 60.9
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 1.3e-14 83.6 134 62.7
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 2.8e-14 82.4 134 60.4
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 3.7e-14 82.0 130 50.8
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 4.8e-14 81.6 130 51.5
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 1.4e-13 80.1 127 58.3
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 2.4e-13 79.3 129 61.2
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 2.4e-13 79.3 127 51.2
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 3.1e-13 79.0 129 61.2
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 3.1e-13 79.0 130 49.2
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 6.9e-13 77.8 137 46.7
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 1.2e-12 77.0 129 58.1
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 1.2e-12 77.0 134 51.5
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 1.2e-12 77.0 139 56.8
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 2.0e-12 76.3 132 58.3
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 2.6e-12 75.9 127 59.8
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 3.4e-12 75.5 102 67.6
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 3.4e-12 75.5 141 48.9
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 3.4e-12 75.5 141 48.9
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 3.4e-12 75.5 130 60.0
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 1.0e-11 73.9 137 55.5
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 1.4e-10 70.1 128 60.2
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 1.9e-10 69.7 100 66.0
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 1.9e-10 69.7 130 58.5
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 4.2e-10 68.6 165 48.5
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 3.5e-09 65.5 89 69.7
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 4.6e-09 65.1 118 54.2
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 1.0e-08 63.9 101 68.3
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 2.3e-08 62.8 130 54.6
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 5.1e-08 61.6 100 60.0
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 5.1e-08 61.6 127 55.9
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 4.3e-07 58.5 164 39.6
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 8.2e-06 54.3 87 65.5


User provided reference genes

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