Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR255700 Cardamine hirsuta HOM05D012458 ORTHO05D014337 7.7e-74 280.4 143 100.0
AL6G45000 Arabidopsis lyrata HOM05D012458 ORTHO05D014337 6.3e-52 207.6 143 79.0
Thhalv10029446m.g Eutrema salsugineum HOM05D012458 ORTHO05D014337 1.1e-51 206.8 144 79.2
Carub.0006s2965 Capsella rubella HOM05D012458 ORTHO05D014337 8.5e-49 197.2 144 75.7
AT4G10910 Arabidopsis thaliana HOM05D012458 ORTHO05D014337 2.1e-47 192.6 137 76.6
BcaB05g23873 Brassica carinata HOM05D012458 ORTHO05D014337 3.5e-42 175.3 145 73.1
Sp6g06590 Schrenkiella parvula HOM05D012458 ORTHO05D014337 8.6e-41 170.6 127 75.6
A02p26440 Brassica napus HOM05D012458 ORTHO05D014337 9.8e-37 157.1 144 66.7
BraA02t07647Z Brassica rapa HOM05D012458 ORTHO05D014337 9.8e-37 157.1 144 66.7
C02p42040 Brassica napus HOM05D012458 ORTHO05D014337 1.7e-36 156.4 144 66.7
BolC2t10239H Brassica oleracea HOM05D012458 ORTHO05D014337 3.7e-36 155.2 144 66.0
BcaC03g16381 Brassica carinata HOM05D012458 ORTHO05D014337 7.3e-32 141.0 130 65.4
Aa31LG9G11210 Aethionema arabicum HOM05D012458 ORTHO05D014337 3.6e-31 138.7 150 58.0
THA.LOC104813045 Tarenaya hassleriana HOM05D012458 ORTHO05D014337 2.3e-14 82.8 171 43.9
Manes.02G008000 Manihot esculenta HOM05D002255 ORTHO05D002288 6.6e-09 64.7 54 53.7
MELO3C016274.2 Cucumis melo HOM05D002255 ORTHO05D002288 4.3e-08 62.0 61 50.8
CANSAT21G1974 Cannabis sativa HOM05D002255 ORTHO05D002288 5.6e-08 61.6 74 40.5
ClCG07G011470 Citrullus lanatus HOM05D002255 ORTHO05D002288 5.6e-08 61.6 87 42.5
Potri.001G089000 Populus trichocarpa HOM05D002255 ORTHO05D002288 9.5e-08 60.8 54 51.9
Cpa.g.sc634.4 Carica papaya HOM05D002255 ORTHO05D002288 1.2e-07 60.5 105 33.3
Medtr8g099655 Medicago truncatula HOM05D002255 ORTHO05D002288 1.6e-07 60.1 75 45.3
TWI60G0014 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 1.6e-07 60.1 48 60.4
CsaV3_4G006750 Cucumis sativus L. HOM05D002255 ORTHO05D002288 2.1e-07 59.7 71 46.5
ECA246G0612 Erigeron canadensis HOM05D002255 ORTHO05D002288 2.1e-07 59.7 47 59.6
COL.COLO4_10731 Corchorus olitorius HOM05D002255 ORTHO05D002288 2.8e-07 59.3 67 43.3
Eucgr.E00885 Eucalyptus grandis HOM05D002255 ORTHO05D002288 2.8e-07 59.3 54 50.0
Hma1.2p1_0359F.1_g135100 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 2.8e-07 59.3 54 51.9
CSS0015495 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 3.6e-07 58.9 59 49.2
Sabra01G0065200 Salix brachista HOM05D002255 ORTHO05D002288 3.6e-07 58.9 54 50.0
CSS0048832 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 4.7e-07 58.5 54 51.9
Ciclev10023315m.g Citrus clementina HOM05D002255 ORTHO05D002288 4.7e-07 58.5 80 43.8
Thecc.03G301000 Theobroma cacao HOM05D002255 ORTHO05D002288 4.7e-07 58.5 67 46.3
Duzib205G1099 Durio zibethinus HOM05D002255 ORTHO05D002288 6.2e-07 58.2 66 42.4
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 6.2e-07 58.2 80 38.8
Gohir.D03G084400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 8.1e-07 57.8 50 54.0
Gorai.003G078200 Gossypium raimondii HOM05D002255 ORTHO05D002288 8.1e-07 57.8 50 54.0
Rhsim02G0246900 Rhododendron simsii HOM05D002255 ORTHO05D002288 8.1e-07 57.8 90 43.3
Solyc08g008360.2 Solanum lycopersicum HOM05D002255 ORTHO05D002288 8.1e-07 57.8 62 43.5
Sopen08g004240 Solanum pennellii HOM05D002255 ORTHO05D002288 8.1e-07 57.8 62 43.5
PGSC0003DMG400005843 Solanum tuberosum HOM05D002255 ORTHO05D002288 8.1e-07 57.8 62 43.5
Ca_17465_v3 Cicer arietinum L. HOM05D002255 ORTHO05D002288 1.1e-06 57.4 56 51.8
HanXRQChr17g0534981 Helianthus annuus HOM05D002255 ORTHO05D002288 1.1e-06 57.4 51 54.9
Peaxi162Scf00102g01853 Petunia axillaris HOM05D002255 ORTHO05D002288 1.1e-06 57.4 50 52.0
Atru.chr9.1928 Acer truncatum HOM05D002255 ORTHO05D002288 1.4e-06 57.0 66 42.4
Lsat_1_v5_gn_3_11301 Lactuca sativa HOM05D002255 ORTHO05D002288 1.4e-06 57.0 54 53.7
CiPaw.12G081200 Carya illinoinensis HOM05D002255 ORTHO05D002288 1.8e-06 56.6 54 48.1
DCAR_006522 Daucus carota HOM05D002255 ORTHO05D002288 1.8e-06 56.6 62 41.9
TPR.G3449 Trifolium pratense HOM05D002255 ORTHO05D002288 1.8e-06 56.6 61 47.5
Gohir.A02G099300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 2.4e-06 56.2 50 52.0
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 2.4e-06 56.2 58 48.3
MBI06_g13416_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 2.4e-06 56.2 54 48.1
Gohir.A09G189700 Gossypium hirsutum HOM05D002255 ORTHO05D002288 4.0e-06 55.5 51 49.0
Gohir.D09G184400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 4.0e-06 55.5 51 49.0
Gorai.006G206900 Gossypium raimondii HOM05D002255 ORTHO05D002288 4.0e-06 55.5 51 49.0
Lj2P163T54 Lonicera japonica HOM05D002255 ORTHO05D002288 5.2e-06 55.1 47 57.4
Prupe.5G123000 Prunus persica HOM05D002255 ORTHO05D002288 5.2e-06 55.1 60 43.3
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 6.8e-06 54.7 84 34.5
Nn1g00261 Nelumbo nucifera HOM05D002255 ORTHO05D002288 6.8e-06 54.7 53 49.1
Actinidia22177 Actinidia chinensis HOM05D002255 ORTHO05D002288 8.9e-06 54.3 51 52.9
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 8.9e-06 54.3 59 44.1
QL02p029876 Quercus lobata HOM05D002255 ORTHO05D002288 8.9e-06 54.3 54 46.3


User provided reference genes

Program Settings