Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR255670 Cardamine hirsuta HOM05D006022 ORTHO05D007649 0.0e+00 1794.6 967 100.0
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 0.0e+00 1435.2 973 80.6
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 0.0e+00 1414.4 974 79.6
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 0.0e+00 1370.9 999 75.7
Thhalv10028398m.g Eutrema salsugineum HOM05D006022 ORTHO05D007649 0.0e+00 1340.1 977 75.9
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 0.0e+00 1334.7 974 75.9
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 0.0e+00 1299.3 974 74.3
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 0.0e+00 1294.6 974 74.1
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 0.0e+00 1294.3 972 73.9
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 0.0e+00 1286.6 996 72.7
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 0.0e+00 1283.9 977 73.6
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 0.0e+00 1271.1 999 72.0
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 2.7e-287 992.3 979 60.3
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 2.9e-185 653.3 1131 42.7
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 7.2e-184 648.7 1066 44.6
Cpa.g.sc79.13 Carica papaya HOM05D006022 ORTHO05D007649 8.0e-183 645.2 912 47.5
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 9.8e-181 638.3 1116 42.6
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 1.8e-179 634.0 1104 42.0
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 1.8e-179 634.0 917 47.2
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 3.2e-179 633.3 1126 42.9
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 1.0e-177 628.2 919 47.0
COL.COLO4_10720 Corchorus olitorius HOM05D006022 ORTHO05D007649 3.9e-177 626.3 968 45.4
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 8.6e-177 625.2 1129 41.4
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 1.0e-174 618.2 1049 42.9
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 1.4e-174 617.8 1129 42.0
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 8.9e-174 615.1 1117 41.2
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.5e-173 614.4 918 46.7
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 1.5e-173 614.4 811 49.4
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 4.4e-173 612.8 1079 42.4
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 8.3e-172 608.6 1176 40.0
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 7.0e-171 605.5 1115 42.2
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.0e-170 604.0 918 46.4
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 6.6e-169 599.0 916 45.9
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.1e-168 598.2 917 45.9
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 1.5e-168 597.8 1138 40.0
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 4.3e-168 596.3 1225 38.9
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 8.0e-167 592.0 928 45.4
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 2.3e-166 590.5 1071 41.8
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 5.2e-166 589.3 921 45.5
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 6.8e-166 589.0 1082 41.0
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 2.2e-164 583.9 829 47.0
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 8.3e-164 582.0 1069 41.6
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 3.2e-163 580.1 1067 41.0
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 2.7e-162 577.0 1070 41.3
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 1.1e-160 571.6 1058 40.6
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 2.5e-160 570.5 813 47.6
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 7.3e-160 568.9 1097 40.8
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 2.0e-157 560.8 1130 40.0
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 2.2e-156 557.4 1107 39.7
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 4.9e-156 556.2 1071 40.5
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 6.4e-156 555.8 1101 39.8
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 1.9e-155 554.3 1073 39.4
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 3.2e-155 553.5 1116 38.8
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 7.1e-155 552.4 1028 41.7
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 1.2e-154 551.6 1063 40.9
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 3.5e-154 550.1 1121 39.7
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 6.0e-154 549.3 1063 40.8
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 1.0e-153 548.5 1104 39.8
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 6.6e-153 545.8 1040 40.5
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 7.3e-152 542.3 809 46.5
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 9.6e-152 542.0 1075 39.0
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 1.2e-151 541.6 1085 39.5
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 2.1e-151 540.8 1061 40.6
Eucgr.E00880 Eucalyptus grandis HOM05D006022 ORTHO05D007649 1.1e-150 538.5 796 46.0
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 2.4e-150 537.3 1101 38.4
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 2.4e-150 537.3 1079 40.2
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 8.9e-150 535.4 1116 38.6
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 1.5e-149 534.6 1073 39.7
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 2.0e-149 534.3 1094 39.3
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 2.0e-149 534.3 1060 40.3
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 7.6e-149 532.3 1020 41.9
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 7.6e-149 532.3 1063 40.4
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 7.6e-149 532.3 1089 39.9
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 1.7e-148 531.2 867 43.1
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.2e-148 530.8 1023 39.4
DCAR_029909 Daucus carota HOM05D006022 ORTHO05D007649 1.4e-147 528.1 793 45.5
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 4.2e-147 526.6 795 44.3
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 4.2e-147 526.6 1045 38.5
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 2.7e-146 523.9 997 40.9
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 3.5e-146 523.5 1059 40.1
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 1.7e-145 521.2 1042 39.8
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 5.1e-145 519.6 1098 38.6
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 1.5e-144 518.1 837 43.8
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 9.6e-144 515.4 1090 38.9
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 1.3e-143 515.0 1051 39.4
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.2e-141 508.4 1067 39.4
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 2.0e-141 507.7 907 42.1
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 2.1e-135 487.6 792 43.9
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 1.8e-134 484.6 1021 39.2
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.9e-132 477.2 1013 37.7
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 6.9e-126 456.1 800 40.8
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 5.7e-120 436.4 927 39.7
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 8.2e-95 352.8 876 34.1
Duzib205G1781 Durio zibethinus HOM05D006022 ORTHO05D007649 2.6e-85 321.2 476 45.6
Oeu023154.1 Olea europaea HOM05D006022 ORTHO05D007649 1.6e-74 285.4 363 50.1
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 1.4e-73 282.3 737 34.5
HPP92_009829 Vanilla planifolia HOM05D006022 ORTHO05D007649 4.4e-72 277.3 996 29.9
Os12g0209700 Oryza sativa ssp. japonica HOM05D006022 ORTHO05D007649 1.7e-63 248.8 578 35.6
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 5.4e-62 243.8 653 35.4
Sc22g0004920 Simmondsia chinensis HOM05D006022 ORTHO05D007649 2.3e-60 238.4 415 41.0
SHI06973 Sapria himalayana HOM05D006022 ORTHO05D007649 1.2e-50 206.1 484 35.3
TPR.G40773 Trifolium pratense HOM05D006022 ORTHO05D007649 1.4e-46 192.6 275 46.5
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 2.7e-45 188.3 954 26.8
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 1.7e-44 185.7 784 27.7
Oeu009975.1 Olea europaea HOM05D006022 ORTHO05D007649 3.9e-44 184.5 392 38.0
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 1.7e-39 169.1 899 26.7
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 3.0e-28 131.7 928 24.2
Actinidia11683 Actinidia chinensis HOM05D006022 ORTHO05D007649 4.6e-13 81.3 114 46.5
CBR_g31499 Chara braunii HOM05D006022 ORTHO05D007649 1.4e-09 69.7 113 40.7


User provided reference genes

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