Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.9e-119 432.6 225 100.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 8.3e-83 310.8 226 79.2
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.1e-81 306.2 225 78.7
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.3e-75 287.0 227 76.2
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 4.6e-73 278.5 225 74.2
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 3.0e-72 275.8 225 74.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.0e-72 275.8 223 74.4
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.3e-71 271.9 227 73.1
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.3e-71 271.2 230 72.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.9e-66 256.5 249 67.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.6e-52 209.5 283 52.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.3e-39 165.6 127 77.2
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 7.6e-36 154.8 226 51.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.9e-34 150.2 217 50.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 2.5e-34 149.8 215 47.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.1e-33 146.7 214 46.3
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.5e-33 146.0 218 48.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 6.1e-33 145.2 223 47.5
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 6.1e-33 145.2 186 51.1
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 7.9e-33 144.8 217 47.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.9e-33 144.8 225 47.1
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 7.9e-33 144.8 217 47.5
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.0e-32 144.4 215 47.4
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.3e-32 143.3 221 45.2
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.3e-32 143.3 227 47.6
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 6.7e-32 141.7 215 47.9
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.1e-31 141.0 215 46.5
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.5e-31 140.6 214 44.4
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.5e-31 140.6 221 44.8
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.3e-31 139.4 214 46.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 7.4e-31 138.3 214 46.7
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-30 136.7 216 45.4
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.7e-30 136.0 190 48.9
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.3e-30 135.2 207 47.8
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.2e-30 134.8 243 39.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-29 134.4 215 44.2
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.4e-29 134.0 199 47.7
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.1e-29 132.9 218 45.4
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.1e-29 132.5 219 45.7
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.1e-29 132.5 215 45.1
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.3e-29 132.1 215 44.7
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.3e-29 132.1 214 43.9
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-28 130.6 220 46.8
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.5e-28 130.6 220 46.8
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-28 130.6 183 49.7
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 2.0e-28 130.2 215 46.0
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.6e-28 129.8 218 45.9
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.4e-28 129.4 216 44.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.4e-28 129.4 215 43.3
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.4e-28 129.4 260 39.2
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.5e-28 129.0 198 48.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 5.9e-28 128.6 200 48.0
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 5.9e-28 128.6 213 41.8
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.0e-27 127.9 221 46.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.3e-27 127.5 223 44.4
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.3e-27 127.5 242 39.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.9e-27 126.3 218 45.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.8e-27 125.9 215 43.7
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.8e-27 125.9 222 43.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.8e-27 125.9 224 45.1
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.5e-27 125.2 263 38.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.1e-26 124.4 219 46.1
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.5e-26 123.2 219 43.8
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.2e-26 122.9 218 42.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.2e-26 122.9 229 43.7
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 4.2e-26 122.5 206 43.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 5.5e-26 122.1 222 45.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 7.2e-26 121.7 184 48.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 7.2e-26 121.7 184 48.9
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 9.4e-26 121.3 217 41.9
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.2e-25 120.9 219 43.8
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.6e-25 120.6 193 48.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.1e-25 120.2 234 43.6
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.7e-25 119.8 191 47.1
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 4.6e-25 119.0 229 43.2
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.9e-25 118.2 219 42.9
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.9e-25 118.2 219 42.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.9e-25 118.2 214 43.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.0e-24 117.9 214 42.1
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.8e-24 117.1 198 47.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.9e-24 115.9 230 40.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.1e-24 115.5 225 41.8
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 8.8e-24 114.8 216 43.1
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-23 114.4 275 36.4
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 4.3e-23 112.5 214 41.1
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.7e-23 112.1 214 43.9
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 7.4e-23 111.7 236 39.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 9.7e-23 111.3 205 41.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 9.7e-23 111.3 219 42.9
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 9.7e-23 111.3 217 40.6
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.3e-22 110.9 217 41.9
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.7e-22 110.5 213 41.3
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.8e-22 109.0 214 43.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 6.3e-22 108.6 218 39.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 8.2e-22 108.2 222 40.5
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.8e-21 107.1 202 43.6
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.3e-21 105.5 124 54.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.3e-21 105.5 124 54.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-20 104.4 275 36.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.2e-20 104.4 275 36.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-20 103.6 129 50.4
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 3.4e-20 102.8 124 50.8
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.9e-20 102.1 128 51.6
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 7.7e-20 101.7 129 49.6
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.2e-19 100.1 124 50.8
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.8e-19 99.4 126 50.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.0e-19 99.0 124 50.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 5.0e-19 99.0 126 49.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.9e-18 97.1 139 47.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 9.4e-18 94.7 124 50.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.2e-17 94.4 120 52.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.6e-17 94.0 128 49.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.1e-17 93.6 216 38.4
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 4.7e-17 92.4 201 38.8
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.9e-17 91.7 166 42.2
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.0e-16 91.3 265 34.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.0e-16 91.3 122 48.4
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.0e-16 89.7 141 46.1
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 8.8e-16 88.2 316 31.0
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 8.8e-16 88.2 204 37.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.1e-15 87.8 124 48.4
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 3.3e-15 86.3 214 39.3
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 9.7e-15 84.7 67 70.1
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.2e-14 83.6 187 38.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.8e-14 83.2 256 34.0
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 4.8e-14 82.4 109 49.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 8.2e-14 81.6 88 55.7
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.1e-13 79.7 100 50.0
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.6e-12 76.6 306 29.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 8.5e-11 71.6 100 47.0
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 7.2e-10 68.6 106 47.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.1e-09 67.0 200 33.5
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.7e-07 58.9 100 42.0
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.7e-07 58.9 100 42.0
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.7e-07 58.9 100 42.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.3e-06 57.8 290 29.0
BcaB06g26463 Brassica carinata HOM05D005115 ORTHO05D005703 1.7e-06 57.4 90 45.6
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.7e-06 56.2 51 54.9


User provided reference genes

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