Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.0e-168 596.7 304 100.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 3.5e-153 545.0 300 92.3
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.0e-148 529.3 304 88.5
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.3e-147 526.6 302 90.4
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 2.2e-142 509.2 306 87.3
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.1e-141 506.9 303 85.1
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.6e-140 502.3 308 84.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.6e-140 502.3 308 84.4
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.4e-140 501.9 309 84.1
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.9e-122 443.0 283 78.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 4.0e-120 435.3 296 77.0
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.8e-115 418.7 290 70.7
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 8.5e-115 417.5 268 74.6
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 2.5e-114 416.0 302 69.5
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 9.4e-114 414.1 272 75.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 9.4e-114 414.1 273 72.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 2.1e-113 412.9 294 71.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.7e-113 412.5 302 69.2
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.0e-112 409.1 262 80.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 4.0e-112 408.7 268 74.3
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.2e-112 408.3 270 74.1
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.2e-111 407.1 268 73.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.5e-111 406.8 267 74.5
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.0e-111 406.4 265 74.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.0e-111 406.4 271 73.8
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 2.6e-111 406.0 266 71.8
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 2.6e-111 406.0 268 74.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.6e-111 406.0 268 74.3
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 4.4e-111 405.2 297 69.4
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 4.4e-111 405.2 280 72.9
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.4e-111 405.2 295 70.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.4e-111 405.2 295 70.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.4e-111 405.2 293 68.6
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.3e-110 403.7 325 64.6
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.3e-110 403.7 284 70.1
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.3e-110 403.7 307 67.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.2e-110 402.9 265 75.5
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 2.8e-110 402.5 269 74.3
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.7e-110 402.1 302 67.5
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 4.8e-110 401.7 268 72.8
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.8e-110 401.7 285 69.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.3e-110 401.4 266 72.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 6.3e-110 401.4 288 68.8
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 6.3e-110 401.4 269 74.3
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 8.3e-110 401.0 302 67.2
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 8.3e-110 401.0 268 73.1
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.1e-109 400.6 302 67.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.4e-109 400.2 307 66.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.4e-109 399.4 268 71.6
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 2.4e-109 399.4 268 72.4
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 3.1e-109 399.1 270 71.1
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 5.4e-109 398.3 306 66.3
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 9.1e-109 397.5 265 72.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.2e-108 397.1 258 75.6
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.2e-108 397.1 266 72.9
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.6e-108 396.7 262 73.7
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 7.7e-108 394.4 279 70.6
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 7.7e-108 394.4 261 72.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.7e-107 393.3 268 72.0
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.9e-107 392.5 264 72.7
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.0e-107 391.7 291 69.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.1e-106 390.6 269 71.4
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.2e-106 388.7 266 71.4
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.2e-106 388.7 266 71.4
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.2e-106 388.7 280 69.6
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.2e-106 388.7 264 69.7
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 9.5e-106 387.5 267 71.2
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 9.5e-106 387.5 271 68.3
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.2e-105 387.1 268 70.9
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 2.8e-105 386.0 269 70.3
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 4.7e-105 385.2 267 70.8
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 6.1e-105 384.8 268 70.5
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.0e-103 379.8 281 69.4
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.7e-102 376.7 291 65.6
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.8e-102 375.9 270 67.4
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.3e-102 374.8 316 60.4
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 8.3e-102 374.4 318 60.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-101 374.0 269 69.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-101 374.0 269 69.1
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.8e-101 373.2 314 61.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-101 372.5 230 78.3
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.2e-101 370.9 268 66.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.6e-100 370.2 246 70.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.3e-99 366.3 263 66.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 5.0e-99 365.2 263 66.2
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.1e-98 364.0 286 65.4
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 3.3e-98 362.5 231 75.8
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.3e-98 362.1 231 74.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.6e-97 360.1 266 65.4
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.6e-97 359.0 231 73.6
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.6e-97 359.0 279 66.3
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 6.1e-97 358.2 231 74.5
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.8e-96 356.7 246 67.9
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.9e-96 354.4 230 73.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.6e-95 352.8 274 62.8
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.9e-93 346.7 372 51.6
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.7e-89 332.0 249 69.1
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.9e-86 322.8 206 82.5
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-85 318.9 237 67.9
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 9.2e-85 317.8 196 76.0
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 8.6e-83 311.2 251 58.6
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.4e-80 303.9 250 56.8
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 7.6e-79 298.1 211 71.1
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 8.3e-78 294.7 291 53.3
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.0e-75 286.2 219 65.8
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.0e-71 273.5 197 64.5
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 8.4e-70 268.1 205 72.7
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 5.4e-69 265.4 194 69.1
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.1e-68 263.5 171 80.7
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.6e-68 262.3 199 68.8
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-65 253.8 230 60.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-64 250.8 200 66.0
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-63 246.1 157 77.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.9e-62 243.0 228 61.8
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 6.4e-62 241.9 176 71.0
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.1e-56 223.0 130 81.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.2e-55 221.1 195 55.4
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 6.9e-48 195.3 142 75.4
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-47 192.6 157 65.6
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-46 191.0 156 66.0
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-46 190.3 157 65.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-46 189.9 157 65.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-46 188.7 173 60.7
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-45 186.4 157 64.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-45 185.7 156 64.7
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-45 185.7 157 65.6
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-43 180.6 158 62.7
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.5e-42 176.8 122 66.4
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-39 166.8 144 63.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-38 162.2 157 59.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.5e-37 160.2 98 80.6
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-36 155.2 107 75.7
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.8e-35 154.1 99 77.8
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-35 151.8 160 55.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 8.7e-35 151.8 160 55.6
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-34 150.6 123 65.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-34 150.6 94 81.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-34 150.2 125 64.0
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 5.7e-34 149.1 290 35.5
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-33 147.9 175 52.6
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 7.2e-29 132.1 88 69.3
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-28 128.6 162 50.0
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-26 123.6 109 60.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 8.5e-22 108.6 70 80.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.4e-21 107.8 74 67.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-21 107.5 132 48.5
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-18 95.1 89 58.4
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-17 94.7 96 54.2
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.8e-16 90.9 57 73.7
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 3.1e-16 90.1 55 76.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 2.8e-09 67.0 110 38.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.8e-09 67.0 165 30.9
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 8.5e-06 55.5 46 58.7


User provided reference genes

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