Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 4.1e-229 797.7 409 100.0
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.1e-152 543.9 430 71.4
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 4.5e-151 538.5 450 69.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.9e-149 533.1 454 69.8
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 9.6e-146 520.8 432 70.8
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 4.3e-138 495.4 457 65.2
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.7e-138 495.0 456 65.4
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 4.2e-133 478.8 455 66.2
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 1.5e-130 470.3 444 66.7
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 5.3e-128 461.8 440 66.6
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 5.3e-128 461.8 440 66.6
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 5.3e-128 461.8 440 66.6
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.5e-125 453.0 435 61.6
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 6.8e-107 391.7 454 52.4
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.1e-64 251.5 450 39.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.6e-63 247.7 442 39.4
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.6e-63 247.7 456 40.8
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 6.0e-63 245.7 454 39.4
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 1.7e-62 244.2 465 38.9
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 5.1e-62 242.7 467 40.3
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.5e-61 240.4 457 39.2
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 3.3e-61 240.0 453 39.3
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.3e-61 239.6 454 38.3
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 9.6e-61 238.4 452 40.0
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.1e-60 237.3 459 38.6
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 2.8e-60 236.9 466 38.2
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 4.7e-60 236.1 443 39.3
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 1.1e-59 235.0 450 39.3
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.2e-59 232.6 435 39.8
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.0e-58 230.7 435 39.5
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 4.4e-58 229.6 452 37.8
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.8e-58 229.2 435 39.5
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 5.8e-58 229.2 449 37.9
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.7e-57 227.6 450 39.1
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.7e-57 227.6 450 39.1
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.9e-57 226.1 468 38.0
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 6.4e-57 225.7 447 38.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 8.4e-57 225.3 447 38.0
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 8.4e-57 225.3 469 37.7
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 8.4e-57 225.3 461 37.5
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 3.2e-56 223.4 444 38.1
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 7.1e-56 222.2 457 38.3
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.7e-55 220.3 484 37.2
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 6.0e-55 219.2 459 35.9
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.0e-54 218.4 468 37.2
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 1.3e-54 218.0 439 38.7
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.3e-54 217.2 405 44.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 3.0e-54 216.9 454 37.2
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 3.0e-54 216.9 456 36.4
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 8.7e-54 215.3 458 37.3
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.1e-53 214.9 491 36.3
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 1.1e-53 214.9 449 36.7
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.5e-53 213.8 459 37.3
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 7.3e-53 212.2 478 34.5
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 9.6e-53 211.8 444 37.8
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 1.6e-52 211.1 414 37.7
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.1e-52 210.7 457 37.2
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 8.1e-52 208.8 411 38.0
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 2.4e-51 207.2 411 40.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 2.4e-51 207.2 427 37.9
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 4.0e-51 206.5 453 36.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 5.3e-51 206.1 475 34.7
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 6.9e-51 205.7 440 35.5
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 6.9e-51 205.7 442 36.7
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 2.0e-50 204.1 455 34.5
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 2.0e-50 204.1 457 36.3
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.9e-49 200.3 440 34.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 4.9e-49 199.5 499 35.1
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.9e-48 197.6 437 34.6
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.2e-48 196.8 414 37.4
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 5.4e-48 196.1 427 36.1
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.2e-47 194.9 470 38.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 3.5e-47 193.4 424 36.8
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 5.1e-46 189.5 461 36.2
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.5e-45 188.0 414 37.9
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.9e-45 187.6 470 36.8
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 2.5e-45 187.2 419 37.2
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 4.3e-45 186.4 446 35.9
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 7.3e-45 185.7 491 34.0
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 1.6e-44 184.5 483 34.0
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.1e-44 184.1 479 33.4
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 6.2e-44 182.6 478 33.1
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.4e-43 181.4 441 35.4
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 4.0e-43 179.9 447 32.7
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 6.9e-43 179.1 444 35.8
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 9.0e-43 178.7 450 35.8
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.2e-42 178.3 437 35.0
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.3e-41 174.9 433 34.4
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 1.3e-41 174.9 446 34.3
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 3.8e-41 173.3 445 33.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 3.8e-41 173.3 421 33.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 6.4e-41 172.6 437 34.3
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 8.4e-41 172.2 478 32.2
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.2e-40 170.2 456 33.6
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 5.4e-40 169.5 444 34.2
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 7.1e-40 169.1 381 36.2
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.6e-39 167.9 418 34.2
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.1e-39 167.5 444 34.0
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.1e-37 161.8 437 35.2
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.1e-36 157.5 423 33.1
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.8e-35 154.5 401 34.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.9e-35 152.5 413 33.9
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.6e-31 139.8 423 30.5
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.0e-30 137.1 349 33.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 3.9e-22 110.2 368 30.7
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 3.1e-19 100.5 475 25.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 5.3e-19 99.8 224 35.7
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 1.1e-16 92.0 239 35.1
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 1.0e-14 85.5 58 81.0
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.8e-14 84.7 200 31.0
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 5.1e-14 83.2 272 33.5
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 5.1e-14 83.2 163 39.3
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.7e-12 78.2 203 33.5
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 6.3e-12 76.3 139 41.0
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.1e-11 75.5 475 25.7
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.9e-08 64.7 166 33.1
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 5.1e-06 56.6 100 36.0


User provided reference genes

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