Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR253240 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.5e-90 337.4 354 100.0
CARHR253180 Cardamine hirsuta HOM05D004673 ORTHO05D005596 5.6e-61 239.2 354 85.0
CARHR253280 Cardamine hirsuta HOM05D004673 ORTHO05D005596 1.1e-51 208.4 358 71.5
CARHR253220 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.5e-45 187.2 358 75.4
Sp3g02900 Schrenkiella parvula HOM05D004673 ORTHO05D005596 6.2e-44 182.6 354 77.1
BcaB07g31134 Brassica carinata HOM05D004673 ORTHO05D005596 1.3e-38 164.9 358 70.7
Carub.0003s0318 Capsella rubella HOM05D004673 ORTHO05D005596 8.7e-38 162.2 353 68.0
AT4G04220 Arabidopsis thaliana HOM05D004673 ORTHO05D005596 2.5e-37 160.6 369 71.5
C03p40670 Brassica napus HOM05D004673 ORTHO05D005596 3.3e-37 160.2 355 62.0
BolC3t16332H Brassica oleracea HOM05D004673 ORTHO05D005596 3.3e-37 160.2 355 62.0
A03p33470 Brassica napus HOM05D004673 ORTHO05D005596 7.3e-37 159.1 355 65.4
C09p23810 Brassica napus HOM05D004673 ORTHO05D005596 1.3e-36 158.3 359 68.5
BolC9t55304H Brassica oleracea HOM05D004673 ORTHO05D005596 1.3e-36 158.3 359 68.5
CARHR078050 Cardamine hirsuta HOM05D004673 ORTHO05D005596 6.9e-35 152.5 342 75.4
AL6G47840 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 9.0e-35 152.1 365 67.4
BraA03t12522Z Brassica rapa HOM05D004673 ORTHO05D005596 9.0e-35 152.1 355 63.9
CARHR253200 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.3e-30 137.5 362 72.7
A09p18980 Brassica napus HOM05D004673 ORTHO05D005596 3.3e-29 133.7 336 63.1
CARHR253370 Cardamine hirsuta HOM05D004673 ORTHO05D005596 4.3e-29 133.3 354 65.5
BcaC01g04387 Brassica carinata HOM05D004673 ORTHO05D005596 1.2e-23 115.2 159 51.6
CARHR253250 Cardamine hirsuta HOM05D004673 ORTHO05D005596 2.3e-22 110.9 148 74.3
CARHR253290 Cardamine hirsuta HOM05D004673 ORTHO05D005596 6.7e-22 109.4 148 74.3
BcaC04g22073 Brassica carinata HOM05D000897 ORTHO05D000716 3.3e-21 107.1 348 62.1
Aa31LG5G14520 Aethionema arabicum HOM05D004673 ORTHO05D005596 9.6e-21 105.5 343 71.1
Carub.0006s3213 Capsella rubella HOM05D004673 ORTHO05D005596 1.3e-20 105.1 178 48.3
AL3G13020 Arabidopsis lyrata HOM05D004673 ORTHO05D005596 2.8e-20 104.0 354 33.3
BcaB04g19351 Brassica carinata HOM05D004673 ORTHO05D005596 3.7e-20 103.6 170 62.9
Dinv13478 Davidia involucrata HOM05D004673 ORTHO05D005596 2.9e-17 94.0 358 59.5
QL01p003522 Quercus lobata HOM05D000182 ORTHO05D005596 3.8e-17 93.6 352 31.2
Atru.chr1.2923 Acer truncatum HOM05D004673 ORTHO05D005596 6.5e-17 92.8 355 55.2
Thhalv10027711m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 6.5e-17 92.8 96 69.8
Prupe.7G003900 Prunus persica HOM05D004673 ORTHO05D005596 1.1e-16 92.0 349 53.6
CSS0005892 Camellia sinensis var. sinensis HOM05D004673 ORTHO05D005596 4.2e-16 90.1 347 59.9
COL.COLO4_13599 Corchorus olitorius HOM05D004673 ORTHO05D005596 1.6e-15 88.2 165 61.8
Lsat_1_v5_gn_6_55380 Lactuca sativa HOM05D004673 ORTHO05D005596 1.6e-15 88.2 364 57.4
Lsat_1_v5_gn_6_55581 Lactuca sativa HOM05D004673 ORTHO05D005596 1.6e-15 88.2 358 59.8
Gorai.007G289600 Gossypium raimondii HOM05D004673 ORTHO05D005596 2.7e-15 87.4 170 52.9
Lsat_1_v5_gn_1_25861 Lactuca sativa HOM05D004673 ORTHO05D005596 7.9e-15 85.9 359 51.0
Gohir.A11G259500 Gossypium hirsutum HOM05D004673 ORTHO05D005596 5.1e-14 83.2 169 61.5
TAR623G1034 Trochodendron aralioides HOM05D004673 ORTHO05D005596 5.1e-14 83.2 341 57.8
CsaV3_1G041610 Cucumis sativus L. HOM05D004673 ORTHO05D005596 5.7e-13 79.7 352 54.0
Thecc.05G294400 Theobroma cacao HOM05D004673 ORTHO05D005596 7.4e-13 79.3 170 58.2
MELO3C015571.2 Cucumis melo HOM05D004673 ORTHO05D005596 2.8e-12 77.4 351 55.3
DCAR_032195 Daucus carota HOM05D004673 ORTHO05D005596 3.7e-12 77.0 172 48.3
DCAR_030109 Daucus carota HOM05D004673 ORTHO05D005596 8.2e-12 75.9 183 50.8
DCAR_030100 Daucus carota HOM05D004673 ORTHO05D005596 1.8e-11 74.7 369 24.7
ClCG03G014570 Citrullus lanatus HOM05D004673 ORTHO05D005596 2.4e-11 74.3 346 51.7
DCAR_030114 Daucus carota HOM05D004673 ORTHO05D005596 3.1e-11 73.9 180 44.4
ECA233G4485 Erigeron canadensis HOM05D004673 ORTHO05D005596 4.1e-11 73.6 172 57.0
CANSAT11G1431 Cannabis sativa HOM05D004673 ORTHO05D005596 5.3e-11 73.2 343 57.1
AUR62032055 Chenopodium quinoa HOM05D004673 ORTHO05D005596 5.3e-11 73.2 169 55.6
Aqoxy1G00488 Aquilegia oxysepala HOM05D004673 ORTHO05D005596 1.2e-10 72.0 173 52.6
DCAR_030110 Daucus carota HOM05D004673 ORTHO05D005596 1.2e-10 72.0 184 48.4
Potri.001G003200 Populus trichocarpa HOM05D004673 ORTHO05D005596 3.4e-10 70.5 71 49.3
Manes.03G086906 Manihot esculenta HOM05D004673 ORTHO05D005596 7.6e-10 69.3 325 59.4
QL01p003771 Quercus lobata HOM05D004673 ORTHO05D005596 7.6e-10 69.3 174 49.4
EL10Ac3g06819 Beta vulgaris HOM05D004673 ORTHO05D005596 1.3e-09 68.6 71 53.5
HanXRQChr13g0405711 Helianthus annuus HOM05D004673 ORTHO05D005596 1.3e-09 68.6 62 54.8
Ciclev10024612m.g Citrus clementina HOM05D004673 ORTHO05D005596 1.7e-09 68.2 71 49.3
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 1.7e-09 68.2 183 25.7
Dinv00554 Davidia involucrata HOM05D004673 ORTHO05D005596 1.7e-09 68.2 56 57.1
QL01p004573 Quercus lobata HOM05D004673 ORTHO05D005596 1.7e-09 68.2 45 68.9
Haze_22936 Corylus avellana HOM05D004673 ORTHO05D005596 2.2e-09 67.8 71 49.3
DCAR_030102 Daucus carota HOM05D004673 ORTHO05D005596 2.2e-09 67.8 172 33.7
Dinv09263 Davidia involucrata HOM05D004673 ORTHO05D005596 2.2e-09 67.8 69 53.6
Hma1.2p1_0589F.1_g184830 Hydrangea macrophylla HOM05D004673 ORTHO05D005596 3.8e-09 67.0 97 37.1
Sabra01G0002300 Salix brachista HOM05D004673 ORTHO05D005596 3.8e-09 67.0 169 54.4
THA.LOC104821143 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 3.8e-09 67.0 81 43.2
TWI60G0809 Tripterygium wilfordii HOM05D004673 ORTHO05D005596 5.0e-09 66.6 71 46.5
HanXRQChr07g0187111 Helianthus annuus HOM05D004673 ORTHO05D005596 6.5e-09 66.2 62 53.2
QL02p096023 Quercus lobata HOM05D004673 ORTHO05D005596 6.5e-09 66.2 54 61.1
CANSAT11G2454 Cannabis sativa HOM05D000071 ORTHO05D000029 8.4e-09 65.9 168 45.2
Thhalv10027707m.g Eutrema salsugineum HOM05D004673 ORTHO05D005596 1.1e-08 65.5 74 50.0
QL02p095991 Quercus lobata HOM05D004673 ORTHO05D005596 1.1e-08 65.5 53 62.3
Aa31LG5G14510 Aethionema arabicum HOM05D004673 ORTHO05D005596 1.4e-08 65.1 139 40.3
Cc01_g00160 Coffea canephora HOM05D004673 ORTHO05D005596 1.4e-08 65.1 173 55.5
Nitab4.5_0006195g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 1.4e-08 65.1 171 54.4
Nitab4.5_0000551g0010 Nicotiana tabacum HOM05D004673 ORTHO05D005596 1.9e-08 64.7 171 53.2
Actinidia00906 Actinidia chinensis HOM05D004673 ORTHO05D005596 2.5e-08 64.3 69 47.8
Sed0024334 Sechium edule HOM05D004673 ORTHO05D005596 2.5e-08 64.3 352 57.1
Dinv09265 Davidia involucrata HOM05D004673 ORTHO05D005596 3.2e-08 63.9 68 50.0
ECA233G2517 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-08 63.5 74 47.3
DCAR_030099 Daucus carota HOM05D004673 ORTHO05D005596 5.5e-08 63.2 61 49.2
DCAR_030979 Daucus carota HOM05D004673 ORTHO05D005596 7.1e-08 62.8 61 45.9
HanXRQChr13g0405741 Helianthus annuus HOM05D004673 ORTHO05D005596 7.1e-08 62.8 50 58.0
MBI11_g38090_MAGBIO Magnolia biondii HOM05D004673 ORTHO05D005596 7.1e-08 62.8 173 54.9
QL08p055485 Quercus lobata HOM05D004673 ORTHO05D005596 7.1e-08 62.8 94 33.0
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 9.3e-08 62.4 68 47.1
MELO3C015573.2 Cucumis melo HOM05D004673 ORTHO05D005596 1.2e-07 62.0 186 34.9
Peaxi162Scf00705g00063 Petunia axillaris HOM05D004673 ORTHO05D005596 1.2e-07 62.0 171 52.6
Cfa009556 Carpinus fangiana HOM05D004673 ORTHO05D005596 1.6e-07 61.6 97 36.1
DCAR_030108 Daucus carota HOM05D004673 ORTHO05D005596 1.6e-07 61.6 42 64.3
QL07p015672 Quercus lobata HOM05D004673 ORTHO05D005596 2.1e-07 61.2 42 69.0
Lsat_1_v5_gn_6_53540 Lactuca sativa HOM05D004673 ORTHO05D005596 2.7e-07 60.8 45 60.0
QL01p004480 Quercus lobata HOM05D004673 ORTHO05D005596 2.7e-07 60.8 45 60.0
DCAR_030125 Daucus carota HOM05D004673 ORTHO05D005596 3.5e-07 60.5 50 50.0
Cpa.g.sc1158.1 Carica papaya HOM05D004673 ORTHO05D005596 4.6e-07 60.1 60 55.0
QL01p016345 Quercus lobata HOM05D004673 ORTHO05D005596 6.1e-07 59.7 65 49.2
Rhsim13G0233200 Rhododendron simsii HOM05D004673 ORTHO05D005596 6.1e-07 59.7 61 49.2
DCAR_013113 Daucus carota HOM05D004673 ORTHO05D005596 7.9e-07 59.3 54 57.4
DCAR_030112 Daucus carota HOM05D004673 ORTHO05D005596 7.9e-07 59.3 47 53.2
Ciclev10018053m.g Citrus clementina HOM05D004673 ORTHO05D005596 1.3e-06 58.5 172 55.2
ECA233G4672 Erigeron canadensis HOM05D004673 ORTHO05D005596 1.3e-06 58.5 72 44.4
Lsat_1_v5_gn_6_55460 Lactuca sativa HOM05D004673 ORTHO05D005596 1.8e-06 58.2 45 55.6
QL01p004552 Quercus lobata HOM05D004673 ORTHO05D005596 1.8e-06 58.2 68 47.1
QL01p016358 Quercus lobata HOM05D004673 ORTHO05D005596 1.8e-06 58.2 64 50.0
THA.LOC104816063 Tarenaya hassleriana HOM05D004673 ORTHO05D005596 2.3e-06 57.8 72 44.4
QL08p003602 Quercus lobata HOM05D004673 ORTHO05D005596 3.0e-06 57.4 180 49.4
Cpa.g.c34637 Carica papaya HOM05D004673 ORTHO05D005596 5.1e-06 56.6 60 48.3


User provided reference genes

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