Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.2e-71 273.1 144 100.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.7e-52 208.4 142 81.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 9.2e-51 203.8 134 85.1
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.5e-50 201.8 119 89.1
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 4.3e-48 194.9 139 76.3
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 4.3e-48 194.9 139 76.3
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 7.3e-48 194.1 139 75.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 7.3e-48 194.1 139 75.5
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.0e-46 188.3 122 85.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.2e-43 178.7 116 83.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.6e-42 176.4 136 72.1
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.6e-42 176.4 136 72.1
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 6.0e-42 174.5 117 80.3
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.9e-41 171.8 118 79.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.9e-41 171.8 118 79.7
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 6.6e-41 171.0 117 77.8
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 4.4e-37 158.3 127 72.4
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 3.0e-25 119.0 122 58.2
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.3e-24 114.4 119 58.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-23 112.8 123 56.1
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.8e-23 112.5 123 56.9
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.0e-22 108.6 123 55.3
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.0e-22 108.6 123 55.3
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.0e-22 108.6 123 55.3
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.5e-21 106.7 124 54.8
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.7e-20 103.2 112 55.4
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.8e-20 102.1 119 52.1
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 1.0e-17 94.0 121 52.1
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 5.1e-17 91.7 78 60.3
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.1e-17 91.7 116 50.9
BcaB05g23718 Brassica carinata HOM05D008153 ORTHO05D004666 2.2e-12 76.3 47 80.9
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.2e-11 72.0 112 40.2
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.4e-11 71.6 124 41.9
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-10 70.5 124 41.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.2e-10 70.5 114 38.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.7e-10 69.3 112 42.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 3.5e-10 68.9 103 42.7
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.5e-10 68.9 111 40.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.6e-10 68.6 109 40.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.0e-09 67.4 124 39.5
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-09 67.4 124 40.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.3e-09 67.0 123 40.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.8e-09 66.6 120 39.2
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.3e-09 66.2 119 42.9
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.9e-09 65.5 103 42.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 6.7e-09 64.7 117 37.6
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.5e-08 63.5 113 37.2
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.9e-08 63.2 107 42.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.9e-08 63.2 120 35.0
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.5e-08 62.8 100 40.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.5e-08 62.8 100 40.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.5e-08 62.8 75 46.7
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 2.5e-08 62.8 118 35.6
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.5e-08 62.8 111 39.6
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.3e-08 62.4 78 43.6
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 3.3e-08 62.4 100 39.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.3e-08 62.0 122 38.5
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 4.3e-08 62.0 105 39.0
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.6e-08 61.6 98 40.8
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 5.6e-08 61.6 122 36.9
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.6e-08 61.6 121 34.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 7.4e-08 61.2 124 40.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 7.4e-08 61.2 77 45.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 9.6e-08 60.8 111 35.1
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 9.6e-08 60.8 75 45.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.3e-07 60.5 119 36.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-07 60.5 67 49.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.1e-07 59.7 112 39.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.1e-07 59.7 112 39.3
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.8e-07 59.3 78 43.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.8e-07 59.3 77 49.4
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-07 59.3 96 37.5
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.8e-07 59.3 66 50.0
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-07 59.3 78 43.6
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.8e-07 58.5 66 51.5
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.8e-07 58.5 105 36.2
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 4.8e-07 58.5 119 32.8
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.8e-07 58.5 99 34.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.2e-07 58.2 96 42.7
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 6.2e-07 58.2 112 39.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 6.2e-07 58.2 118 37.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 6.2e-07 58.2 118 33.1
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.1e-07 57.8 114 33.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 8.1e-07 57.8 112 39.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.1e-06 57.4 122 36.1
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.1e-06 57.4 77 45.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.1e-06 57.4 77 45.5
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.4e-06 57.0 123 31.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.4e-06 57.0 77 44.2
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.8e-06 56.6 66 51.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.8e-06 56.6 77 45.5
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.8e-06 56.6 77 44.2
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.8e-06 56.6 124 33.1
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-06 56.6 103 39.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.4e-06 56.2 123 35.0
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.4e-06 56.2 68 45.6
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-06 55.8 139 35.3
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 3.1e-06 55.8 77 41.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.1e-06 55.8 67 46.3
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.0e-06 55.5 119 34.5
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.0e-06 55.5 99 38.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 4.0e-06 55.5 119 35.3
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 4.0e-06 55.5 73 47.9
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.0e-06 55.5 77 48.1
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 4.0e-06 55.5 78 43.6
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.0e-06 55.5 77 42.9
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.0e-06 55.5 121 33.1
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 5.3e-06 55.1 112 38.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.3e-06 55.1 66 47.0
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 5.3e-06 55.1 77 41.6
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 5.3e-06 55.1 91 39.6
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.3e-06 55.1 68 42.6
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 6.9e-06 54.7 112 38.4
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 6.9e-06 54.7 78 42.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.9e-06 54.7 77 42.9
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.9e-06 54.7 77 42.9
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 6.9e-06 54.7 122 32.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 6.9e-06 54.7 122 32.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 9.0e-06 54.3 92 38.0
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.0e-06 54.3 118 33.9
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 9.0e-06 54.3 122 34.4
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 9.0e-06 54.3 122 34.4


User provided reference genes

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