Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.6e-138 493.8 247 100.0
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.4e-46 190.7 262 46.2
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.4e-45 186.0 262 44.3
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.6e-37 158.3 266 43.6
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.6e-37 158.3 80 93.8
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.4e-30 137.5 126 57.9
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.3e-28 131.0 239 38.9
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.4e-27 127.5 248 38.3
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.4e-27 127.5 248 38.3
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.4e-27 127.5 248 38.3
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.6e-26 124.0 165 46.1
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.5e-26 122.9 239 39.7
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 4.6e-26 122.5 248 37.5
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 4.6e-26 122.5 248 37.5
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 4.6e-26 122.5 239 36.0
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 1.0e-25 121.3 362 33.1
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-25 120.9 247 36.8
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 1.3e-25 120.9 247 36.8
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 5.1e-25 119.0 247 36.4
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 5.1e-25 119.0 247 36.4
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 5.1e-25 119.0 247 36.4
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 6.7e-25 118.6 239 37.2
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.3e-24 115.9 246 37.0
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.6e-24 114.8 242 35.1
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 1.3e-23 114.4 242 36.0
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.6e-23 114.0 235 35.7
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-23 113.6 250 37.6
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.0e-22 109.4 238 36.1
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 9.0e-22 108.2 247 34.8
CARHR252270 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.2e-21 107.8 53 96.2
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.8e-21 105.5 88 60.2
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 3.8e-20 102.8 259 33.6
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.1e-19 101.3 149 43.6
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 2.5e-19 100.1 228 35.1
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 7.1e-19 98.6 229 34.1
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 7.1e-19 98.6 265 32.1
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 9.3e-19 98.2 232 33.2
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 9.3e-19 98.2 232 33.2
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.6e-18 97.4 264 31.1
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 2.7e-18 96.7 252 32.1
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 4.6e-18 95.9 232 34.1
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.6e-18 95.9 253 32.0
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 4.6e-18 95.9 266 32.7
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 7.9e-18 95.1 239 29.3
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.0e-17 94.7 69 63.8
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.8e-17 94.0 100 52.0
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.0e-17 93.2 246 30.9
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.9e-17 92.8 266 31.2
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 6.7e-17 92.0 97 52.6
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.7e-17 92.0 265 30.2
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 8.7e-17 91.7 253 31.6
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 1.1e-16 91.3 298 30.5
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.1e-16 91.3 266 29.7
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 1.5e-16 90.9 232 29.7
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.9e-16 90.5 240 31.2
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.9e-16 90.5 250 30.8
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.5e-16 90.1 264 28.8
Carub.0006s3319 Capsella rubella HOM05D003286 ORTHO05D002463 5.7e-16 89.0 184 38.6
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 7.4e-16 88.6 240 29.6
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 1.3e-15 87.8 266 30.8
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.3e-15 87.8 269 29.0
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.3e-15 87.8 261 29.5
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.1e-15 87.0 264 29.9
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 2.1e-15 87.0 265 28.3
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.8e-15 86.7 274 28.8
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 2.8e-15 86.7 259 29.7
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.8e-15 86.7 206 35.0
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 3.7e-15 86.3 262 29.8
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 3.7e-15 86.3 257 28.4
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.7e-15 86.3 264 29.9
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 4.8e-15 85.9 271 30.6
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.8e-15 85.9 272 29.4
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 4.8e-15 85.9 259 29.3
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 6.3e-15 85.5 259 30.1
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.1e-14 83.2 268 29.5
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 5.3e-14 82.4 265 30.6
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 9.0e-14 81.6 240 30.0
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 1.2e-13 81.3 230 27.8
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.5e-13 80.9 258 32.2
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 1.5e-13 80.9 250 29.6
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.0e-13 80.5 258 28.7
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 2.0e-13 80.5 287 32.1
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 2.0e-13 80.5 258 27.9
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 2.6e-13 80.1 104 45.2
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 2.6e-13 80.1 251 28.3
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 2.6e-13 80.1 258 31.4
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 3.4e-13 79.7 251 30.3
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 5.9e-13 79.0 80 48.8
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 7.6e-13 78.6 287 31.7
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 7.6e-13 78.6 76 48.7
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 7.6e-13 78.6 261 27.2
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 7.6e-13 78.6 249 30.9
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.0e-12 78.2 268 29.1
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.0e-12 78.2 300 27.3
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 1.3e-12 77.8 267 27.0
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.7e-12 77.4 267 27.0
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 2.2e-12 77.0 259 28.2
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.2e-12 77.0 242 28.9
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 2.2e-12 77.0 67 49.3
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.9e-12 76.6 86 43.0
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 2.9e-12 76.6 252 29.0
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.9e-12 76.6 229 27.9
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 5.0e-12 75.9 260 27.7
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 5.0e-12 75.9 228 28.9
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 5.0e-12 75.9 266 25.6
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 5.0e-12 75.9 251 25.5
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 6.5e-12 75.5 274 26.3
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.1e-11 74.7 160 38.8
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.1e-11 74.7 276 25.4
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.4e-11 74.3 258 27.1
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.9e-11 73.9 262 27.9
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.9e-11 73.9 247 27.9
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.9e-11 73.9 274 27.7
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 2.5e-11 73.6 252 29.4
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.5e-11 73.6 285 25.3
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 2.5e-11 73.6 250 28.0
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 4.2e-11 72.8 72 45.8
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 4.2e-11 72.8 81 39.5
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 5.5e-11 72.4 116 39.7
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 5.5e-11 72.4 116 39.7
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.5e-11 72.4 90 42.2
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 5.5e-11 72.4 229 29.3
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 9.3e-11 71.6 289 27.3
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 9.3e-11 71.6 116 40.5
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 9.3e-11 71.6 241 28.2
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 1.6e-10 70.9 242 29.8
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 2.7e-10 70.1 116 39.7
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 3.5e-10 69.7 101 37.6
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 4.6e-10 69.3 213 29.1
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 4.6e-10 69.3 70 45.7
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 3.9e-09 66.2 148 34.5
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.9e-09 66.2 241 27.0
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.9e-09 66.2 85 37.6
TAR624G0468 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.9e-09 66.2 85 37.6
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 3.9e-09 66.2 85 37.6
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 5.1e-09 65.9 254 26.0
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 5.1e-09 65.9 69 46.4
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 5.1e-09 65.9 85 38.8
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 5.1e-09 65.9 85 37.6
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 6.7e-09 65.5 272 26.1
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 6.7e-09 65.5 260 26.9
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 6.7e-09 65.5 234 29.1
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.5e-08 64.3 168 32.7
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 1.5e-08 64.3 168 32.7
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.9e-08 63.9 259 25.9
Phvul.007G052250 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.5e-08 63.5 79 41.8
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 3.3e-08 63.2 69 52.2
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 3.3e-08 63.2 282 26.6
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 5.7e-08 62.4 142 34.5
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.4e-08 62.0 236 29.7
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 7.4e-08 62.0 94 44.7
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 7.4e-08 62.0 85 36.5
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 9.7e-08 61.6 156 32.7
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 9.7e-08 61.6 74 44.6
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 9.7e-08 61.6 102 38.2
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.6e-07 60.8 292 26.0
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 2.2e-07 60.5 231 26.8
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.8e-07 60.1 262 26.7
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 3.7e-07 59.7 287 23.0
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 8.2e-07 58.5 243 25.9
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 8.2e-07 58.5 339 25.4
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 1.4e-06 57.8 120 33.3
Eucgr.D00805 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.4e-06 57.8 52 50.0
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 1.4e-06 57.8 285 27.4
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 3.1e-06 56.6 242 26.0
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 4.1e-06 56.2 293 24.6
FAN05G5633 Fragaria x ananassa HOM05D007466 ORTHO05D002463 9.0e-06 55.1 233 25.8


User provided reference genes

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