Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 7.6e-197 690.3 338 100.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 3.4e-173 611.7 328 89.0
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.2e-172 609.0 335 88.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 5.1e-169 597.8 335 86.6
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 7.2e-163 577.4 334 83.8
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 1.8e-158 562.8 334 82.3
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 9.4e-147 523.9 329 77.5
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-146 523.5 329 77.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 2.1e-146 522.7 330 77.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.4e-142 510.0 339 74.3
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 7.7e-141 504.2 339 74.0
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.5e-139 500.0 309 76.7
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.6e-138 496.5 333 73.9
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 6.8e-137 491.1 333 70.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 2.8e-135 485.7 330 68.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 4.8e-135 485.0 330 68.8
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 8.3e-135 484.2 330 68.2
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.4e-134 483.4 328 68.3
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 9.1e-134 480.7 330 68.5
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 4.5e-133 478.4 328 67.7
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 7.7e-133 477.6 332 68.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-132 476.9 330 68.2
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.7e-132 476.5 330 68.8
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.2e-132 476.1 330 68.8
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.9e-132 475.7 330 67.3
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.8e-132 475.3 330 67.6
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.5e-132 474.6 327 68.8
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.5e-131 473.4 330 68.5
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.5e-131 473.4 332 67.5
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.9e-131 473.0 330 67.3
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 9.5e-131 470.7 328 68.6
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 9.5e-131 470.7 328 67.7
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 1.2e-130 470.3 330 67.3
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 2.1e-130 469.5 328 67.7
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 6.1e-130 468.0 330 67.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.3e-129 466.1 330 67.0
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.3e-129 466.1 330 67.0
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.0e-129 465.7 330 66.4
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 4.0e-129 465.3 330 64.5
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 5.2e-129 464.9 328 67.4
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.8e-129 464.5 330 67.6
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 6.8e-129 464.5 333 67.3
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.2e-128 463.8 328 66.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.0e-128 463.0 335 66.0
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.0e-128 463.0 329 67.5
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.6e-128 462.6 330 66.1
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.6e-128 462.6 330 65.8
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.7e-128 461.5 329 64.1
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.3e-127 460.3 330 65.8
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.7e-127 459.9 329 65.7
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.8e-127 459.1 328 65.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.8e-127 459.1 328 65.9
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.1e-126 457.2 329 65.0
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-126 457.2 336 63.4
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.4e-126 456.8 330 65.8
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 2.4e-126 456.1 328 67.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.4e-126 456.1 334 66.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 4.1e-126 455.3 328 64.9
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 4.1e-126 455.3 324 66.7
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 5.4e-126 454.9 328 64.6
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 7.0e-126 454.5 331 65.3
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 9.2e-126 454.1 335 64.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.2e-125 453.8 335 64.5
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-125 453.8 333 64.6
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.0e-125 453.0 332 66.3
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.0e-125 453.0 324 67.3
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.7e-125 452.6 328 65.5
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.7e-125 452.6 324 65.7
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 3.5e-125 452.2 328 64.9
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 3.5e-125 452.2 336 63.7
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.5e-125 452.2 328 64.9
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 4.5e-125 451.8 328 65.5
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.5e-125 451.8 324 64.5
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 7.7e-125 451.1 330 64.5
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.0e-124 450.7 330 65.5
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.3e-124 450.3 328 65.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.7e-124 449.9 328 64.3
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.3e-124 449.5 328 64.0
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 6.6e-124 448.0 328 63.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 6.6e-124 448.0 329 65.7
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.6e-123 444.9 333 63.4
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.6e-123 444.9 330 64.2
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 7.3e-123 444.5 324 66.0
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 9.5e-123 444.1 328 64.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.2e-122 443.7 334 64.1
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.2e-122 443.7 328 64.0
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.8e-122 442.6 332 63.6
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.8e-122 442.6 328 64.0
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.0e-121 440.7 330 61.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.8e-121 439.9 330 61.8
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.3e-121 439.5 342 60.2
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 4.0e-121 438.7 326 66.0
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 5.2e-121 438.3 324 65.1
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.2e-121 438.3 324 63.9
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.5e-120 434.5 329 62.6
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.4e-118 429.5 334 62.0
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.4e-118 428.3 329 61.7
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 7.0e-118 427.9 324 62.0
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.0e-116 424.1 275 77.5
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 3.0e-116 422.5 332 61.1
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 6.6e-116 421.4 336 61.0
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 3.3e-115 419.1 328 58.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-114 417.2 330 61.8
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.6e-114 416.8 330 61.2
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 6.2e-114 414.8 334 60.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 3.1e-113 412.5 333 60.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.6e-112 409.5 333 60.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.3e-111 407.1 340 59.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 2.2e-111 406.4 297 65.0
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.2e-111 406.4 331 60.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.1e-107 394.0 330 60.3
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 5.6e-107 391.7 289 64.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.2e-106 390.6 325 58.5
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.6e-106 390.2 320 60.0
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.8e-106 389.4 289 63.7
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.4e-102 376.3 382 50.5
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.2e-101 374.0 339 56.0
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.0e-97 359.0 328 54.3
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 3.3e-91 339.3 257 63.0
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.1e-90 336.7 267 59.9
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 3.9e-84 315.8 343 48.4
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.0e-81 305.8 209 70.8
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 9.0e-81 304.7 217 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.8e-79 299.3 340 45.9
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 4.9e-79 298.9 316 52.8
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 6.4e-79 298.5 336 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.3e-76 290.0 376 44.1
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 5.5e-70 268.9 250 55.2
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.6e-69 267.3 406 38.9
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.7e-69 266.5 275 50.9
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 4.6e-69 265.8 328 44.5
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.0e-64 250.4 180 63.3
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.3e-55 221.1 186 53.2
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.2e-53 214.5 365 36.2
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 6.1e-53 212.2 189 53.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 3.6e-45 186.4 148 59.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.3e-42 177.9 143 60.8
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 2.6e-40 170.2 249 39.4
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.0e-39 168.3 154 53.2
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 6.5e-39 165.6 328 34.5
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 7.2e-38 162.2 121 61.2
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-38 162.2 138 57.2
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-38 162.2 138 57.2
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 4.7e-29 132.9 93 72.0
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 9.7e-27 125.2 109 58.7
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 9.1e-25 118.6 152 42.8
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 2.5e-22 110.5 91 54.9
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 5.2e-20 102.8 414 23.9
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.6e-13 81.3 75 50.7
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 4.7e-13 79.7 77 48.1
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 9.8e-11 72.0 77 45.5
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.1e-09 67.0 38 73.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.3e-07 60.8 90 37.8
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 2.9e-07 60.5 66 42.4
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.8e-07 60.1 51 58.8


User provided reference genes

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