Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 6.8e-116 421.0 268 100.0
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 4.8e-61 238.8 275 66.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 9.4e-57 224.6 269 65.4
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.8e-53 213.0 254 62.6
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 2.9e-50 203.0 275 56.4
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 2.5e-49 199.9 186 60.8
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 9.4e-49 198.0 275 54.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 9.4e-49 198.0 275 54.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 9.4e-49 198.0 275 54.9
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 3.6e-48 196.1 273 56.8
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 7.0e-44 181.8 163 60.7
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.2e-39 165.6 282 51.8
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 2.2e-37 160.2 269 50.6
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.3e-18 97.1 174 40.8
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.0e-18 95.9 177 39.5
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 8.6e-18 95.1 169 40.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.0e-15 86.7 163 35.0
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.0e-15 86.3 163 35.0
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-14 84.0 162 38.9
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.0e-14 84.0 156 35.9
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.6e-14 83.6 166 38.0
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.4e-14 83.2 164 40.9
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 3.4e-14 83.2 152 36.8
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.4e-14 83.2 180 33.9
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 3.4e-14 83.2 176 35.2
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.4e-14 82.8 166 38.6
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 4.4e-14 82.8 162 37.0
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 7.5e-14 82.0 156 35.9
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-13 80.9 162 34.0
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-13 80.9 167 32.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.2e-13 80.5 162 39.5
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.2e-13 80.5 162 39.5
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.4e-12 77.0 185 34.1
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-12 77.0 157 38.2
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 3.2e-12 76.6 161 37.9
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 3.2e-12 76.6 161 37.9
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.1e-12 76.3 168 30.4
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.0e-12 75.5 171 30.4
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.0e-11 73.9 170 34.7
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.7e-11 73.6 159 35.8
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.5e-11 73.2 170 34.7
AL4G46480 Arabidopsis lyrata HOM05D012310 ORTHO05D080413 3.5e-11 73.2 50 70.0
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 5.9e-11 72.4 173 31.8
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.9e-11 72.4 171 30.4
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.8e-11 72.0 158 29.7
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 7.8e-11 72.0 154 37.0
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 1.3e-10 71.2 173 31.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.3e-10 71.2 173 31.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.3e-10 71.2 173 31.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-10 70.5 153 32.7
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.3e-10 70.5 166 34.3
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.3e-10 70.5 161 37.3
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.3e-10 70.5 185 30.8
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.9e-10 70.1 172 32.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 5.0e-10 69.3 161 36.6
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.6e-10 68.9 154 37.0
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.6e-10 68.9 166 33.7
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.5e-09 67.0 134 32.8
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.3e-09 66.6 161 31.7
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 3.3e-09 66.6 141 38.3
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 4.3e-09 66.2 159 34.0
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-09 66.2 164 34.1
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 4.3e-09 66.2 152 34.9
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.3e-09 66.2 157 35.7
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.6e-09 65.9 158 34.2
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 5.6e-09 65.9 167 32.9
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.6e-09 65.9 173 30.6
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-08 64.7 133 36.1
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.2e-08 64.7 158 32.3
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.2e-08 64.7 179 30.7
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.6e-08 64.3 162 35.8
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 8.0e-08 62.0 85 43.5
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 2.3e-07 60.5 158 33.5
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-07 60.5 174 32.2
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 3.1e-07 60.1 183 30.6
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-07 60.1 155 33.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 3.1e-07 60.1 155 33.5
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 4.0e-07 59.7 181 28.7
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.8e-07 58.9 111 36.9
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-06 58.2 80 42.5
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-06 57.8 75 44.0
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-06 57.4 162 30.9


User provided reference genes

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