Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 1.3e-102 376.3 187 100.0
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.0e-86 323.6 187 85.6
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 1.1e-85 320.1 188 85.1
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 1.1e-85 320.1 187 85.0
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 4.3e-85 318.2 187 84.5
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 3.2e-80 302.0 188 81.9
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 1.1e-77 293.5 188 79.8
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 1.7e-76 289.7 188 79.3
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 2.8e-76 288.9 188 77.7
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 3.7e-76 288.5 188 79.3
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 6.3e-76 287.7 188 77.7
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.1e-75 287.0 188 78.2
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.8e-75 286.2 211 70.1
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 1.8e-75 286.2 188 77.7
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 6.9e-75 284.3 188 78.2
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 3.2e-72 275.4 188 76.1
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 2.9e-57 225.7 196 62.8
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.9e-56 223.0 200 61.0
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.9e-56 223.0 199 59.8
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 2.5e-56 222.6 195 60.5
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.7e-55 219.2 199 58.8
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 1.0e-54 217.2 198 59.6
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.0e-54 217.2 202 58.9
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 3.0e-54 215.7 189 60.8
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 5.2e-54 214.9 142 73.2
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 6.8e-54 214.5 124 79.0
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 6.8e-54 214.5 138 75.4
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 6.8e-54 214.5 194 55.7
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 6.8e-54 214.5 129 76.7
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 8.8e-54 214.2 188 59.6
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 8.8e-54 214.2 187 58.3
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.5e-53 213.4 124 76.6
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.5e-53 213.4 195 60.5
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 2.0e-53 213.0 128 75.8
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 2.6e-53 212.6 198 58.6
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 2.6e-53 212.6 126 76.2
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 3.4e-53 212.2 196 60.2
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 3.4e-53 212.2 193 60.6
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 3.4e-53 212.2 126 76.2
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 5.7e-53 211.5 136 72.1
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 7.5e-53 211.1 137 71.5
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 7.5e-53 211.1 137 73.0
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 7.5e-53 211.1 195 60.0
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 9.8e-53 210.7 126 76.2
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.3e-52 210.3 200 57.0
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.3e-52 210.3 195 58.5
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.2e-52 209.5 126 75.4
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 2.2e-52 209.5 142 71.1
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 2.8e-52 209.1 194 58.2
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 4.8e-52 208.4 125 78.4
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 4.8e-52 208.4 136 71.3
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 4.8e-52 208.4 126 75.4
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 8.3e-52 207.6 125 76.8
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 8.3e-52 207.6 187 59.4
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.4e-51 206.8 125 76.0
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 2.4e-51 206.1 221 52.5
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 3.1e-51 205.7 125 73.6
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 5.4e-51 204.9 190 56.3
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 7.0e-51 204.5 197 56.3
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.2e-50 203.8 199 56.3
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.2e-50 203.8 198 57.6
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.2e-50 203.8 128 74.2
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 1.2e-50 203.8 125 73.6
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 1.6e-50 203.4 125 72.0
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 2.0e-50 203.0 142 69.0
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 2.7e-50 202.6 199 53.8
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 2.7e-50 202.6 128 74.2
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.7e-50 202.6 194 55.7
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 3.5e-50 202.2 125 71.2
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 5.9e-50 201.4 133 71.4
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 7.7e-50 201.1 190 57.4
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 7.7e-50 201.1 125 75.2
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.0e-49 200.7 125 72.8
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.0e-49 200.7 125 72.8
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 1.3e-49 200.3 125 73.6
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 1.3e-49 200.3 197 55.8
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 1.3e-49 200.3 200 54.5
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 1.7e-49 199.9 125 72.8
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 1.7e-49 199.9 134 70.1
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 1.7e-49 199.9 137 67.9
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 2.9e-49 199.1 187 55.1
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 2.9e-49 199.1 186 57.0
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 3.8e-49 198.7 178 58.4
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.1e-48 197.2 216 53.7
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.1e-48 197.2 186 58.6
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.5e-48 196.8 136 68.4
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 2.5e-48 196.1 125 70.4
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.2e-47 193.7 125 70.4
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.6e-47 193.4 125 70.4
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.6e-47 193.4 123 69.1
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.1e-47 193.0 125 70.4
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 8.0e-47 191.0 117 74.4
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.0e-46 190.7 111 77.5
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 1.0e-46 190.7 130 68.5
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 3.0e-46 189.1 123 68.3
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 3.0e-46 189.1 125 67.2
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 2.0e-45 186.4 138 64.5
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 2.4e-43 179.5 116 72.4
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 3.1e-43 179.1 179 51.4
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.2e-42 177.2 113 72.6
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 1.6e-42 176.8 132 62.1
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 2.7e-42 176.0 112 72.3
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 7.7e-42 174.5 109 74.3
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.3e-41 173.7 116 71.6
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 6.6e-41 171.4 224 47.8
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 1.1e-40 170.6 174 51.1
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 6.1e-39 164.9 115 67.8
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 3.4e-37 159.1 96 81.2
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 4.4e-37 158.7 127 57.5
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 9.8e-37 157.5 122 64.8
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 1.3e-36 157.1 132 55.3
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 5.4e-35 151.8 91 74.7
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 7.8e-34 147.9 149 54.4
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 4.3e-32 142.1 97 72.2
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.2e-31 140.6 81 81.5
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 2.1e-31 139.8 104 67.3
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 4.7e-31 138.7 89 69.7
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 6.2e-31 138.3 93 72.0
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 8.0e-31 137.9 109 59.6
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 4.0e-30 135.6 84 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.1e-27 127.5 109 55.0
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 7.0e-27 124.8 73 76.7
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 2.0e-26 123.2 116 50.0
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 2.7e-26 122.9 113 49.6
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 1.5e-24 117.1 71 74.6
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 1.5e-21 107.1 97 49.5
CARHR152490 Cardamine hirsuta HOM05D005819 ORTHO05D006780 4.4e-21 105.5 65 86.2
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 7.1e-19 98.2 111 43.2
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 7.3e-16 88.2 118 47.5
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 1.2e-15 87.4 148 42.6
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 1.1e-14 84.3 111 37.8
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 1.2e-13 80.9 125 48.0
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 1.0e-09 67.8 229 27.5
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 6.2e-07 58.5 42 61.9
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.4e-06 56.6 43 55.8
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 5.2e-06 55.5 34 76.5


User provided reference genes

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