Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.8e-236 821.2 415 100.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 8.6e-148 527.7 410 69.0
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 6.6e-132 474.9 409 64.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-114 417.5 419 57.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.3e-110 401.4 428 55.8
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.2e-109 401.0 435 54.5
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-108 397.9 416 55.5
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.3e-107 392.9 428 55.1
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.3e-107 392.9 416 54.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.3e-107 391.7 416 54.3
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-106 391.0 415 54.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-106 391.0 422 55.5
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.4e-104 382.9 424 54.2
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-102 377.1 418 53.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-101 374.0 442 50.5
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-100 369.4 409 54.3
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.1e-100 369.0 418 52.4
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-99 367.9 413 53.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.2e-98 362.1 412 51.5
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-97 359.4 406 53.9
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 2.0e-96 357.1 418 52.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-94 350.5 415 53.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.1e-94 348.6 416 51.7
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 3.5e-93 346.3 415 52.8
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.9e-92 342.8 418 49.8
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-91 341.3 418 50.0
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 1.9e-91 340.5 418 50.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.5e-91 340.1 354 56.8
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 2.0e-88 330.5 424 48.8
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.6e-88 330.1 427 49.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-87 327.0 424 48.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.1e-86 322.0 415 49.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-85 321.2 417 49.2
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 5.1e-84 315.8 414 50.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 9.7e-83 311.6 409 48.4
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-82 310.1 418 48.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-81 306.6 464 45.0
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.7e-76 288.9 448 42.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.7e-76 288.9 448 42.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.8e-76 288.5 448 42.9
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.8e-73 280.8 448 42.6
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.4e-73 280.4 452 39.4
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.4e-73 280.4 424 42.9
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.1e-73 279.6 447 41.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 6.9e-73 278.9 447 41.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.1e-73 278.5 442 41.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 9.1e-73 278.5 442 41.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.2e-72 278.1 448 41.7
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.4e-72 276.6 444 39.9
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.4e-72 276.6 448 41.3
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 5.9e-72 275.8 445 40.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-71 274.6 376 47.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.3e-71 274.6 447 40.9
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.7e-71 274.2 406 44.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.2e-71 273.9 445 40.2
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.9e-71 273.5 433 41.6
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 3.8e-71 273.1 440 41.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 8.5e-71 271.9 447 40.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.4e-70 271.2 448 39.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.9e-70 270.8 450 39.6
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-70 270.8 450 39.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.5e-70 270.4 432 40.0
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.2e-70 269.6 435 40.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 4.2e-70 269.6 437 40.7
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 9.4e-70 268.5 442 40.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.4e-70 268.5 450 39.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.2e-69 268.1 437 41.2
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.6e-69 267.7 443 39.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 6.1e-69 265.8 432 39.4
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 7.9e-69 265.4 444 39.2
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.0e-68 265.0 454 38.8
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.0e-68 265.0 427 41.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.0e-68 265.0 441 39.5
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.8e-68 264.2 431 41.1
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.0e-68 263.5 449 39.0
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.0e-68 263.5 430 40.2
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.9e-68 263.1 443 39.1
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 6.7e-68 262.3 458 37.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 8.8e-68 261.9 447 39.1
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 8.8e-68 261.9 429 39.6
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 2.6e-67 260.4 431 39.2
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 3.3e-67 260.0 432 40.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.7e-67 259.2 435 39.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.7e-67 258.5 414 40.8
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 9.7e-67 258.5 456 37.7
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.7e-67 258.5 448 38.8
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.7e-67 258.5 375 44.8
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 9.7e-67 258.5 432 40.0
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.3e-66 258.1 438 39.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.7e-66 257.7 455 37.6
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.2e-66 257.3 451 38.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.8e-66 256.1 434 38.9
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 6.3e-66 255.8 400 40.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 6.3e-66 255.8 433 40.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 6.3e-66 255.8 431 39.7
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 8.2e-66 255.4 427 38.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.2e-66 255.4 480 37.7
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.1e-65 255.0 473 38.5
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.1e-65 253.4 430 38.8
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 4.1e-65 253.1 430 38.6
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.3e-65 252.7 451 38.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.5e-64 249.6 445 37.3
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 5.9e-64 249.2 430 38.6
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.7e-63 247.7 416 39.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.2e-63 247.3 395 41.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 5.5e-62 242.7 391 39.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.2e-61 241.5 441 37.4
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.7e-61 239.6 502 35.5
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 6.1e-61 239.2 448 38.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 6.1e-61 239.2 447 36.2
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.7e-60 235.7 409 39.6
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.8e-60 235.3 285 49.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.5e-59 234.6 429 36.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.0e-59 234.2 434 37.1
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 5.7e-59 232.6 432 37.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.2e-58 230.7 458 36.9
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.0e-56 224.2 416 38.9
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.6e-56 223.8 360 39.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-51 206.1 415 34.5
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.3e-50 202.2 242 51.2
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.8e-49 201.1 350 41.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.5e-47 192.6 244 46.7
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 4.2e-46 189.9 338 39.6
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.6e-45 188.0 409 35.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 3.6e-45 186.8 429 34.0
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.0e-44 183.7 470 31.9
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-42 177.9 188 58.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-41 174.9 256 44.1
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.2e-38 162.5 163 58.3
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.6e-37 161.4 239 41.4
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.4e-36 158.3 400 32.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 3.0e-36 157.1 174 54.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.0e-35 154.5 302 39.1
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.4e-35 153.3 238 39.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.7e-35 152.9 161 59.0
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 7.3e-30 136.0 129 52.7
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.2e-29 135.2 129 51.9
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.1e-29 134.4 165 50.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.8e-29 134.0 378 29.1
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-28 131.7 198 45.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.7e-26 124.8 273 34.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.9e-26 124.0 130 57.7
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-26 124.0 371 27.2
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.1e-25 122.1 341 33.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-25 122.1 366 28.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.4e-25 120.9 262 32.4
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-24 118.6 114 55.3
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 3.9e-23 113.6 203 34.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.5e-22 110.9 136 48.5
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.1e-20 105.5 276 29.3
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.7e-18 97.1 125 43.2
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 5.4e-17 93.2 97 46.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 7.8e-16 89.4 276 30.4
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-15 88.2 122 41.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 3.9e-15 87.0 87 55.2
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 3.6e-13 80.5 95 44.2
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 4.7e-13 80.1 141 34.8
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 8.1e-13 79.3 94 44.7
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.6e-11 74.3 139 38.8
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 7.6e-11 72.8 73 50.7
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.7e-10 71.6 58 60.3
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-09 68.2 125 37.6
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.1e-08 64.7 104 40.4
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.0e-08 63.2 254 26.0
Sp6g02740 Schrenkiella parvula HOM05D056725 ORTHO05D371744 7.8e-08 62.8 141 36.9
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.7e-07 61.6 61 52.5
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-06 57.4 70 47.1
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 7.3e-06 56.2 58 50.0
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 7.3e-06 56.2 97 40.2


User provided reference genes

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