Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR249920 Cardamine hirsuta HOM05D000209 ORTHO05D018422 1.1e-34 149.4 79 100.0
AL3G14210 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.8e-17 90.9 74 64.9
CARHR078400 Cardamine hirsuta HOM05D000209 ORTHO05D000129 4.8e-17 90.9 69 68.1
AL3G42330 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 8.1e-17 90.1 74 62.2
Sp4g04370 Schrenkiella parvula HOM05D000209 ORTHO05D000129 2.9e-14 81.6 76 55.3
AL6G44790 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.4e-14 80.5 79 57.0
AL2G23540 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-13 79.7 79 55.7
CARHR102680 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.1e-13 79.7 72 62.5
AL3G38550 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.2e-13 78.2 78 59.0
Thhalv10015464m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.2e-12 76.3 76 51.3
Thhalv10021925m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.2e-12 76.3 72 52.8
AT5G41500 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.7e-12 75.1 77 50.6
AT1G65990 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.6e-12 74.3 76 53.9
AT5G41510 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.0e-11 73.2 77 51.9
AT4G10740 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.8e-11 72.4 79 49.4
AL2G23600 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.0e-11 71.6 75 50.7
AT4G33290 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 3.9e-11 71.2 71 57.7
CARHR189820 Cardamine hirsuta HOM05D000209 ORTHO05D000129 5.1e-11 70.9 50 78.0
AT2G38590 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 6.7e-11 70.5 77 49.4
Thhalv10009814m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 2.5e-10 68.6 76 48.7
AL2G23590 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.3e-10 68.2 66 53.0
AL4G35640 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.3e-10 68.2 77 46.8
Thhalv10022089m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 3.3e-10 68.2 74 48.6
AL4G35650 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.3e-10 67.8 75 48.0
AL7G47920 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.3e-10 67.8 76 48.7
Sp1g20770 Schrenkiella parvula HOM05D000209 ORTHO05D000129 9.6e-10 66.6 75 49.3
AT5G41490 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.8e-09 65.1 76 47.4
CARHR101230 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.8e-09 65.1 75 48.0
Thhalv10027497m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 3.7e-09 64.7 74 51.4
Thhalv10022075m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 8.1e-09 63.5 76 46.1
Thhalv10000467m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.4e-08 62.8 74 45.9
BcaB07g32321 Brassica carinata HOM05D000209 ORTHO05D000129 1.8e-08 62.4 75 44.0
Carub.0002s1194 Capsella rubella HOM05D000209 ORTHO05D000129 1.8e-08 62.4 79 44.3
AL3G40130 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.4e-08 62.0 75 44.0
Carub.0003s1660 Capsella rubella HOM05D000209 ORTHO05D000129 2.4e-08 62.0 74 47.3
BcaB06g25682 Brassica carinata HOM05D000209 ORTHO05D000129 3.1e-08 61.6 72 51.4
AT2G18780 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.3e-08 60.8 77 42.9
Carub.0001s3457 Capsella rubella HOM05D000209 ORTHO05D000129 5.3e-08 60.8 76 43.4
BcaB07g32324 Brassica carinata HOM05D000209 ORTHO05D000129 6.9e-08 60.5 75 44.0
BcaC05g28939 Brassica carinata HOM05D000209 ORTHO05D000129 9.0e-08 60.1 72 47.2
BolC5t33815H Brassica oleracea HOM05D000209 ORTHO05D000129 9.0e-08 60.1 72 47.2
Sp3g14050 Schrenkiella parvula HOM05D000209 ORTHO05D000129 9.0e-08 60.1 74 48.6
AL3G29780 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.2e-07 59.7 74 41.9
BcaC06g31389 Brassica carinata HOM05D000209 ORTHO05D000129 1.2e-07 59.7 72 45.8
AL4G35660 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-07 59.3 77 46.8
C05p22590 Brassica napus HOM05D000209 ORTHO05D000129 1.5e-07 59.3 75 46.7
C05p50670 Brassica napus HOM05D000209 ORTHO05D000129 1.5e-07 59.3 72 47.2
CARHR214390 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.5e-07 59.3 74 44.6
Carub.0003s2632 Capsella rubella HOM05D000209 ORTHO05D000129 2.6e-07 58.5 75 44.0
BraA03t12790Z Brassica rapa HOM05D000209 ORTHO05D000129 3.4e-07 58.2 76 44.7
BcaC05g26243 Brassica carinata HOM05D000209 ORTHO05D000129 4.5e-07 57.8 75 46.7
BolC5t30958H Brassica oleracea HOM05D000209 ORTHO05D000129 4.5e-07 57.8 75 46.7
AL3G53160 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.8e-07 57.4 70 42.9
AT3G17620 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.8e-07 57.4 72 44.4
BraA09t39261Z Brassica rapa HOM05D000209 ORTHO05D000129 5.8e-07 57.4 76 43.4
AT3G24580 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 7.6e-07 57.0 75 44.0
Thhalv10017624m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-07 57.0 73 47.9
Thhalv10020932m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 9.9e-07 56.6 72 45.8
AT3G22421 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.3e-06 56.2 78 43.6
BcaC01g03778 Brassica carinata HOM05D000209 ORTHO05D000129 1.7e-06 55.8 73 38.4
Carub.0003s1703 Capsella rubella HOM05D000209 ORTHO05D000129 1.7e-06 55.8 78 42.3
Carub.0006s2772 Capsella rubella HOM05D000209 ORTHO05D000129 1.7e-06 55.8 78 47.4
Thhalv10007777m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.7e-06 55.8 71 45.1
AT3G16820 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.2e-06 55.5 70 35.7
BcaB01g04006 Brassica carinata HOM05D000209 ORTHO05D000129 2.2e-06 55.5 75 37.3
A02p31300 Brassica napus HOM05D000209 ORTHO05D000129 2.2e-06 55.5 74 39.2
A04p23120 Brassica napus HOM05D000209 ORTHO05D000129 2.2e-06 55.5 71 45.1
CARHR107470 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.2e-06 55.5 70 42.9
CARHR133070 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.2e-06 55.5 74 43.2
AL3G28670 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.9e-06 55.1 75 42.7
AT5G36200 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.9e-06 55.1 72 43.1
BraA02t08134Z Brassica rapa HOM05D000209 ORTHO05D000129 2.9e-06 55.1 74 39.2
Carub.0003s2631 Capsella rubella HOM05D000209 ORTHO05D000129 2.9e-06 55.1 77 40.3
CARHR098050 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.9e-06 55.1 70 41.4
AL3G29760 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.8e-06 54.7 74 36.5
BcaC02g11177 Brassica carinata HOM05D000209 ORTHO05D018422 3.8e-06 54.7 64 42.2
BcaC05g28942 Brassica carinata HOM05D000209 ORTHO05D000129 3.8e-06 54.7 74 41.9
C03p43830 Brassica napus HOM05D000209 ORTHO05D000129 3.8e-06 54.7 78 43.6
BolC5t33817H Brassica oleracea HOM05D000209 ORTHO05D000129 3.8e-06 54.7 74 41.9
CARHR092150 Cardamine hirsuta HOM05D000209 ORTHO05D000129 3.8e-06 54.7 74 39.2
Thhalv10022091m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 4.9e-06 54.3 77 41.6
A09p41320 Brassica napus HOM05D000209 ORTHO05D000129 6.4e-06 53.9 77 45.5
CARHR115930 Cardamine hirsuta HOM05D000209 ORTHO05D000129 6.4e-06 53.9 77 41.6
AL2G18120 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 8.4e-06 53.5 73 42.5
BcaB06g25681 Brassica carinata HOM05D000209 ORTHO05D000129 8.4e-06 53.5 75 41.3
A05p32830 Brassica napus HOM05D000389 ORTHO05D000287 8.4e-06 53.5 75 40.0
CARHR100820 Cardamine hirsuta HOM05D000209 ORTHO05D000129 8.4e-06 53.5 77 39.0
Thhalv10021978m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 8.4e-06 53.5 74 40.5


User provided reference genes

Program Settings