Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR249390 Cardamine hirsuta HOM05D002242 ORTHO05D002275 2.3e-141 505.8 289 100.0
AT4G00950 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 1.1e-108 397.1 292 76.4
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 8.1e-107 391.0 290 76.6
AL6G52440 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 4.0e-106 388.7 291 78.0
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 4.5e-105 385.2 290 75.9
BcaB01g02293 Brassica carinata HOM05D002242 ORTHO05D002275 3.2e-103 379.0 291 73.9
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 7.1e-103 377.9 290 74.8
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 7.1e-103 377.9 290 74.8
Sp6g01185 Schrenkiella parvula HOM05D002242 ORTHO05D002275 7.1e-103 377.9 297 72.7
Carub.0006s3599 Capsella rubella HOM05D002242 ORTHO05D002275 2.4e-98 362.8 298 70.5
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 4.0e-98 362.1 290 78.6
Thhalv10028866m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 3.4e-97 359.0 296 72.3
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 7.0e-74 281.6 288 59.7
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 6.5e-64 248.4 291 58.8
THA.LOC104817057 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 1.7e-56 223.8 295 50.5
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 5.8e-36 155.6 295 41.4
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 6.4e-35 152.1 293 39.9
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 6.6e-32 142.1 295 40.3
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 2.5e-31 140.2 293 38.9
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 4.7e-30 136.0 301 37.2
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 4.0e-29 132.9 276 38.8
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 6.8e-29 132.1 295 38.3
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.3e-27 127.9 297 37.4
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 2.2e-27 127.1 290 38.3
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 1.9e-26 124.0 295 36.9
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.4e-26 123.6 289 39.1
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 2.4e-26 123.6 298 36.9
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 5.4e-26 122.5 286 38.8
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 9.2e-26 121.7 289 38.1
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.2e-25 121.3 290 35.5
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 1.6e-25 120.9 286 38.8
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.6e-25 120.9 286 38.5
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.7e-25 120.2 289 37.7
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 4.6e-25 119.4 293 34.8
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.8e-25 118.6 288 36.5
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.3e-24 117.9 263 36.9
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 1.7e-24 117.5 279 36.9
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.5e-23 114.4 292 38.0
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.5e-23 114.4 294 35.4
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 1.5e-23 114.4 289 39.8
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.5e-23 113.6 292 38.0
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.3e-23 113.2 292 34.6
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 5.6e-23 112.5 291 37.1
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.6e-22 110.9 261 37.5
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.7e-22 109.4 292 35.3
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 4.7e-22 109.4 310 33.5
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 5.2e-21 105.9 285 35.8
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 8.9e-21 105.1 284 33.5
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 1.5e-20 104.4 281 35.2
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.3e-19 101.3 289 33.6
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 2.9e-19 100.1 290 32.8
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 4.9e-19 99.4 291 34.4
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.1e-18 98.2 293 36.2
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.4e-18 97.8 289 31.5
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.1e-17 94.0 277 33.9
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.1e-17 94.0 285 29.8
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.7e-17 93.6 276 33.3
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 8.6e-16 88.6 282 29.4
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 8.6e-16 88.6 291 34.0
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 1.5e-15 87.8 275 30.9
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.9e-15 87.4 286 30.4
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 2.5e-15 87.0 275 33.8
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 7.3e-15 85.5 277 31.4
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 1.2e-14 84.7 284 30.3
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 2.1e-14 84.0 300 29.3
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.1e-14 84.0 276 32.6
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 4.7e-14 82.8 281 30.2
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 4.7e-14 82.8 284 29.2
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 4.7e-14 82.8 271 27.3
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 6.2e-14 82.4 297 30.3
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 6.2e-14 82.4 297 28.6
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 8.1e-14 82.0 284 30.6
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 8.1e-14 82.0 291 32.3
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 2.4e-13 80.5 281 27.4
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 3.1e-13 80.1 274 31.0
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 5.2e-13 79.3 294 32.3
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 8.9e-13 78.6 288 29.9
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 1.5e-12 77.8 281 30.6
SalBow3G1264 Salvia bowleyana HOM05D002242 ORTHO05D002275 2.0e-12 77.4 287 28.9
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 3.4e-12 76.6 192 38.5
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 3.4e-12 76.6 280 27.5
MSTRG.17354 Avicennia marina HOM05D002242 ORTHO05D002275 4.4e-12 76.3 290 30.3
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 5.8e-12 75.9 248 29.8
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 2.2e-11 73.9 293 29.0
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 2.2e-11 73.9 281 27.8
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 2.9e-11 73.6 263 28.9
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 2.9e-11 73.6 287 31.4
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 3.8e-11 73.2 281 27.4
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 8.4e-11 72.0 295 29.5
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 1.1e-10 71.6 293 28.3
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.9e-10 70.9 276 30.4
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 2.4e-10 70.5 301 30.2
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 2.4e-10 70.5 289 30.1
Rhsim01G0174300 Rhododendron simsii HOM05D002242 ORTHO05D002275 3.2e-10 70.1 287 30.0
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 3.2e-10 70.1 278 29.9
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 4.2e-10 69.7 290 29.0
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 5.4e-10 69.3 210 31.9
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 7.1e-10 68.9 167 34.7
PSO478G1176 Papaver somniferum HOM05D002242 ORTHO05D002275 7.1e-10 68.9 248 32.7
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 9.3e-10 68.6 202 35.6
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea HOM05D002242 ORTHO05D002275 9.3e-10 68.6 288 29.2
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 1.2e-09 68.2 289 29.4
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 3.5e-09 66.6 289 28.7
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.5e-09 66.6 289 28.7
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 4.6e-09 66.2 289 28.4
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 4.6e-09 66.2 275 28.4
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 4.6e-09 66.2 292 28.1
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 6.0e-09 65.9 279 27.2
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.0e-09 65.9 289 28.4
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 7.8e-09 65.5 288 28.8
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.7e-08 64.3 116 37.1
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 3.9e-08 63.2 279 26.9
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 3.9e-08 63.2 197 32.5
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.9e-08 63.2 292 27.1
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 3.9e-08 63.2 112 42.9
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 3.9e-08 63.2 275 28.7
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 5.1e-08 62.8 111 41.4
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 6.6e-08 62.4 262 28.6
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 6.6e-08 62.4 118 41.5
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 6.6e-08 62.4 117 41.0
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 8.7e-08 62.0 284 25.4
A10p10510 Brassica napus HOM05D002242 ORTHO05D002275 8.7e-08 62.0 279 26.9
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 8.7e-08 62.0 284 27.8
PSO782G1347 Papaver somniferum HOM05D002242 ORTHO05D002275 8.7e-08 62.0 249 32.9
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 1.1e-07 61.6 283 27.2
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 1.5e-07 61.2 112 37.5
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 1.9e-07 60.8 277 25.3
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.9e-07 60.8 276 27.5
Sopen03g022850 Solanum pennellii HOM05D002242 ORTHO05D002275 3.3e-07 60.1 112 36.6
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 4.3e-07 59.7 153 36.6
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.3e-07 59.7 110 40.0
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.3e-07 59.7 106 41.5
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 4.3e-07 59.7 293 27.6
SGA_v2.0_scaffold232G43549 Striga asiatica HOM05D002242 ORTHO05D002275 4.3e-07 59.7 216 32.4
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 5.6e-07 59.3 282 29.8
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 5.6e-07 59.3 252 28.2
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 5.6e-07 59.3 287 27.2
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 7.3e-07 58.9 251 27.9
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 7.3e-07 58.9 279 26.9
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 9.6e-07 58.5 277 27.4
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 9.6e-07 58.5 257 29.2
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.3e-06 58.2 280 26.4
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 2.1e-06 57.4 284 27.8
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 2.1e-06 57.4 269 29.4
THA.LOC104811912 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.1e-06 57.4 287 26.1
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 2.8e-06 57.0 254 24.8
MSTRG.8647 Avicennia marina HOM05D002242 ORTHO05D002275 3.6e-06 56.6 117 34.2
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 3.6e-06 56.6 273 25.6
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 4.8e-06 56.2 212 31.6
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 4.8e-06 56.2 205 32.2
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 6.2e-06 55.8 160 34.4
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 8.1e-06 55.5 257 28.4
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 8.1e-06 55.5 114 40.4
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 8.1e-06 55.5 194 29.9
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 8.1e-06 55.5 117 38.5


User provided reference genes

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