Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR247960 Cardamine hirsuta HOM05D005808 ORTHO05D006196 1.2e-73 279.6 134 100.0
AT1G17890 Arabidopsis thaliana HOM05D005808 ORTHO05D006196 1.3e-59 233.0 139 83.5
AL1G30250 Arabidopsis lyrata HOM05D005808 ORTHO05D006196 1.7e-59 232.6 139 83.5
Carub.0001s1762 Capsella rubella HOM05D005808 ORTHO05D006196 1.9e-58 229.2 139 82.0
CARHR018500 Cardamine hirsuta HOM05D005808 ORTHO05D006196 1.9e-58 229.2 139 82.0
Sp1g15980 Schrenkiella parvula HOM05D005808 ORTHO05D006196 5.5e-58 227.6 139 82.0
Thhalv10008184m.g Eutrema salsugineum HOM05D005808 ORTHO05D006196 1.6e-57 226.1 139 81.3
Aa31LG7G2700 Aethionema arabicum HOM05D005808 ORTHO05D006196 8.0e-57 223.8 137 79.6
BcaB07g34013 Brassica carinata HOM05D005808 ORTHO05D006196 2.3e-56 222.2 139 79.1
C05p16270 Brassica napus HOM05D005808 ORTHO05D006196 2.3e-56 222.2 139 79.1
BolC5t30329H Brassica oleracea HOM05D005808 ORTHO05D006196 2.3e-56 222.2 139 79.1
A06p13950 Brassica napus HOM05D005808 ORTHO05D006196 2.0e-55 219.2 139 77.7
BcaC07g38879 Brassica carinata HOM05D000226 ORTHO05D006196 4.4e-55 218.0 139 77.0
THA.LOC104812192 Tarenaya hassleriana HOM05D005808 ORTHO05D006196 7.7e-52 207.2 136 74.3
Sp5g28220 Schrenkiella parvula HOM05D005808 ORTHO05D006196 5.0e-51 204.5 139 72.7
CARHR066260 Cardamine hirsuta HOM05D005808 ORTHO05D006196 8.5e-51 203.8 137 72.3
AT1G73250 Arabidopsis thaliana HOM05D005808 ORTHO05D006196 4.2e-50 201.4 136 71.3
C06p47390 Brassica napus HOM05D005808 ORTHO05D006196 5.5e-50 201.1 139 70.5
BolC6t39778H Brassica oleracea HOM05D005808 ORTHO05D006196 5.5e-50 201.1 139 70.5
Thhalv10018855m.g Eutrema salsugineum HOM05D005808 ORTHO05D006196 1.2e-49 199.9 133 73.7
AL2G33020 Arabidopsis lyrata HOM05D005808 ORTHO05D006196 1.6e-49 199.5 133 72.9
A07p39200 Brassica napus HOM05D005808 ORTHO05D006196 2.1e-49 199.1 133 71.4
BraA07t31469Z Brassica rapa HOM05D005808 ORTHO05D006196 2.1e-49 199.1 133 71.4
Aqoxy7G03270 Aquilegia oxysepala HOM05D005808 ORTHO05D006196 6.1e-49 197.6 135 71.9
Glyma.09G280100 Glycine max HOM05D005808 ORTHO05D006196 6.1e-49 197.6 133 72.2
Glyma.18G208900 Glycine max HOM05D005808 ORTHO05D006196 6.1e-49 197.6 133 72.2
MD10G1105500 Malus domestica HOM05D005808 ORTHO05D006196 1.4e-48 196.4 135 71.9
Eucgr.C01236 Eucalyptus grandis HOM05D005808 ORTHO05D006196 1.8e-48 196.1 135 72.6
Os06g0652400 Oryza sativa ssp. japonica HOM05D005808 ORTHO05D006196 1.8e-48 196.1 139 68.3
Zm00001eb388990 Zea mays HOM05D005808 ORTHO05D006196 2.3e-48 195.7 139 68.3
FAN17G0928 Fragaria x ananassa HOM05D005808 ORTHO05D006196 3.0e-48 195.3 135 72.6
SGA_v2.0_scaffold45G17002 Striga asiatica HOM05D005808 ORTHO05D006196 3.0e-48 195.3 137 69.3
VMungo1383G1013 Vigna mungo HOM05D005808 ORTHO05D006196 3.0e-48 195.3 133 71.4
Prupe.1G100900 Prunus persica HOM05D005808 ORTHO05D006196 4.0e-48 194.9 135 71.9
RcHm_v2.0_Chr4g0405311 Rosa chinensis HOM05D005808 ORTHO05D006196 4.0e-48 194.9 135 72.6
PGR102G1617 Punica granatum HOM05D005808 ORTHO05D006196 5.2e-48 194.5 135 71.9
SEGI_01162 Sequoiadendron giganteum HOM05D005808 ORTHO05D006196 5.2e-48 194.5 135 70.4
DCAR_024732 Daucus carota HOM05D005808 ORTHO05D006196 6.8e-48 194.1 135 71.9
Migut.J01400 Erythranthe guttata HOM05D005808 ORTHO05D006196 6.8e-48 194.1 137 68.6
Psat0s2845g0200 Pisum sativum HOM05D005808 ORTHO05D006196 6.8e-48 194.1 135 69.6
Potri.006G179100 Populus trichocarpa HOM05D005808 ORTHO05D006196 6.8e-48 194.1 133 71.4
Ca_07714_v3 Cicer arietinum L. HOM05D005808 ORTHO05D006196 8.8e-48 193.7 135 69.6
MD05G1099800 Malus domestica HOM05D005808 ORTHO05D006196 8.8e-48 193.7 135 71.1
Medtr7g108490 Medicago truncatula HOM05D005808 ORTHO05D006196 8.8e-48 193.7 135 70.4
Phvul.008G090200 Phaseolus vulgaris HOM05D005808 ORTHO05D006196 8.8e-48 193.7 133 71.4
Potri.018G101700 Populus trichocarpa HOM05D005808 ORTHO05D006196 8.8e-48 193.7 136 69.9
unitig_748.g7192 Utricularia gibba HOM05D005808 ORTHO05D006196 8.8e-48 193.7 139 67.6
Nitab4.5_0001036g0010 Nicotiana tabacum HOM05D005808 ORTHO05D006196 1.2e-47 193.4 132 71.2
Nitab4.5_0002809g0070 Nicotiana tabacum HOM05D005808 ORTHO05D006196 1.2e-47 193.4 132 71.2
Sopen07g002190 Solanum pennellii HOM05D005808 ORTHO05D006196 1.5e-47 193.0 132 72.0
PGSC0003DMG400011158 Solanum tuberosum HOM05D005808 ORTHO05D006196 1.5e-47 193.0 132 72.0
TPR.G18676 Trifolium pratense HOM05D005808 ORTHO05D006196 1.5e-47 193.0 135 70.4
CiPaw.15G163400 Carya illinoinensis HOM05D005808 ORTHO05D006196 2.0e-47 192.6 135 71.1
Sabra18G0087400 Salix brachista HOM05D005808 ORTHO05D006196 2.6e-47 192.2 136 69.1
Solyc07g006070.1 Solanum lycopersicum HOM05D005808 ORTHO05D006196 2.6e-47 192.2 132 72.0
Ciclev10008917m.g Citrus clementina HOM05D005808 ORTHO05D006196 3.4e-47 191.8 135 70.4
Haze_19066 Corylus avellana HOM05D005808 ORTHO05D006196 3.4e-47 191.8 135 71.1
Haze_19072 Corylus avellana HOM05D005808 ORTHO05D006196 3.4e-47 191.8 135 71.1
FAN12G3030 Fragaria x ananassa HOM05D005808 ORTHO05D006196 4.4e-47 191.4 135 71.1
Sed0021443 Sechium edule HOM05D005808 ORTHO05D006196 4.4e-47 191.4 135 70.4
MSTRG.6169 Avicennia marina HOM05D005808 ORTHO05D006196 5.7e-47 191.0 133 69.2
CSS0038851 Camellia sinensis var. sinensis HOM05D005808 ORTHO05D006196 5.7e-47 191.0 135 71.1
CAN.G1190.16 Capsicum annuum HOM05D005808 ORTHO05D006196 5.7e-47 191.0 132 70.5
Thecc.09G155400 Theobroma cacao HOM05D005808 ORTHO05D006196 7.5e-47 190.7 135 71.1
TWI34G0184 Tripterygium wilfordii HOM05D005808 ORTHO05D006196 7.5e-47 190.7 139 69.1
Manes.04G001000 Manihot esculenta HOM05D005808 ORTHO05D006196 9.8e-47 190.3 136 69.1
Sc18g0003190 Simmondsia chinensis HOM05D005808 ORTHO05D006196 9.8e-47 190.3 132 70.5
Hma1.2p1_0284F.1_g113760 Hydrangea macrophylla HOM05D005808 ORTHO05D006196 1.3e-46 189.9 135 68.9
Oeu031860.1 Olea europaea HOM05D005808 ORTHO05D006196 1.3e-46 189.9 137 67.2
EL10Ac8g18896 Beta vulgaris HOM05D005808 ORTHO05D006196 1.7e-46 189.5 137 67.9
QL02p094407 Quercus lobata HOM05D005808 ORTHO05D006196 1.7e-46 189.5 135 68.9
Gorai.009G008600 Gossypium raimondii HOM05D005808 ORTHO05D006196 2.2e-46 189.1 135 70.4
arahy.Tifrunner.gnm1.ann1.9Q453L Arachis hypogaea HOM05D005808 ORTHO05D006196 2.8e-46 188.7 132 68.9
arahy.Tifrunner.gnm1.ann1.R51DI5 Arachis hypogaea HOM05D005808 ORTHO05D006196 2.8e-46 188.7 132 68.9
Lalb_Chr19g0124141 Lupinus albus HOM05D005808 ORTHO05D006196 2.8e-46 188.7 135 68.9
SGA_v2.0_scaffold265G46071 Striga asiatica HOM05D005808 ORTHO05D006196 2.8e-46 188.7 132 69.7
TAR626G1850 Trochodendron aralioides HOM05D005808 ORTHO05D006196 2.8e-46 188.7 135 69.6
CiPaw.16G105900 Carya illinoinensis HOM05D005808 ORTHO05D006196 3.7e-46 188.3 135 69.6
AUR62025384 Chenopodium quinoa HOM05D005808 ORTHO05D006196 3.7e-46 188.3 136 68.4
AUR62028366 Chenopodium quinoa HOM05D005808 ORTHO05D006196 3.7e-46 188.3 137 67.9
ClCG02G014280 Citrullus lanatus HOM05D005808 ORTHO05D006196 3.7e-46 188.3 135 68.9
Cc06_g14220 Coffea canephora HOM05D005808 ORTHO05D006196 3.7e-46 188.3 135 67.4
Duzib168G1041 Durio zibethinus HOM05D005808 ORTHO05D006196 3.7e-46 188.3 135 69.6
Rhsim01G0021100 Rhododendron simsii HOM05D000821 ORTHO05D006196 3.7e-46 188.3 135 69.6
Gohir.A05G007600 Gossypium hirsutum HOM05D005808 ORTHO05D006196 4.9e-46 188.0 135 69.6
Gohir.D05G008500 Gossypium hirsutum HOM05D005808 ORTHO05D006196 4.9e-46 188.0 135 69.6
FvH4_4g08850 Fragaria vesca HOM05D005808 ORTHO05D006196 6.3e-46 187.6 135 70.4
Lj1g0001762 Lotus japonicus HOM05D005808 ORTHO05D006196 8.3e-46 187.2 134 68.7
Lj6g0026768 Lotus japonicus HOM05D005808 ORTHO05D006196 8.3e-46 187.2 133 68.4
PSO782G2734 Papaver somniferum HOM05D005808 ORTHO05D006196 8.3e-46 187.2 135 68.1
PSO063G5527 Papaver somniferum HOM05D005808 ORTHO05D006196 1.1e-45 186.8 135 68.1
CANSAT11G2252 Cannabis sativa HOM05D005808 ORTHO05D006196 1.8e-45 186.0 135 68.1
MELO3C004113.2 Cucumis melo HOM05D005808 ORTHO05D006196 1.8e-45 186.0 135 68.1
CsaV3_2G007730 Cucumis sativus L. HOM05D005808 ORTHO05D006196 1.8e-45 186.0 135 68.1
Lj9A723T41 Lonicera japonica HOM05D005808 ORTHO05D006196 1.8e-45 186.0 135 68.1
Atru.chr7.401 Acer truncatum HOM05D005808 ORTHO05D006196 3.1e-45 185.3 135 68.1
Sed0024595 Sechium edule HOM05D005808 ORTHO05D006196 1.2e-44 183.3 135 66.7
BcaC08g46743 Brassica carinata HOM05D005808 ORTHO05D006196 2.0e-44 182.6 134 67.9
SMO143G0303 Selaginella moellendorffii HOM05D005808 ORTHO05D006196 2.7e-44 182.2 132 65.9
Nn5g27515 Nelumbo nucifera HOM05D005808 ORTHO05D006196 3.5e-44 181.8 128 71.9
Peaxi162Scf00038g00063 Petunia axillaris HOM05D005808 ORTHO05D006196 3.5e-44 181.8 127 70.1
MBI14_g16421_MAGBIO Magnolia biondii HOM05D005808 ORTHO05D006196 1.0e-43 180.3 135 67.4
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 2.3e-43 179.1 131 68.7
ATR0332G026 Amborella trichopoda HOM05D005808 ORTHO05D006196 2.9e-43 178.7 135 68.1
BcaB03g15037 Brassica carinata HOM05D005808 ORTHO05D006196 2.9e-43 178.7 188 51.1
Mapoly0064s0048 Marchantia polymorpha HOM05D005808 ORTHO05D006196 2.9e-43 178.7 132 65.2
HanXRQChr15g0468821 Helianthus annuus HOM05D005808 ORTHO05D006196 5.0e-43 177.9 136 64.7
HanXRQChr06g0170251 Helianthus annuus HOM05D005808 ORTHO05D006196 6.6e-43 177.6 130 68.5
SHI02828 Sapria himalayana HOM05D005808 ORTHO05D006196 8.6e-43 177.2 132 65.2
TAR383G0114 Trochodendron aralioides HOM05D005808 ORTHO05D006196 1.1e-42 176.8 135 65.9
C08p18240 Brassica napus HOM05D002264 ORTHO05D006196 1.9e-42 176.0 119 73.1
ECA233G5554 Erigeron canadensis HOM05D005808 ORTHO05D006196 1.9e-42 176.0 129 67.4
Pp3c10_6390 Physcomitrium patens HOM05D005808 ORTHO05D006196 1.2e-41 173.3 132 62.1
Lsat_1_v5_gn_5_72880 Lactuca sativa HOM05D005808 ORTHO05D006196 1.6e-41 172.9 136 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3310 Anthoceros agrestis HOM05D005808 ORTHO05D006196 2.1e-41 172.6 132 63.6
CDE11G1252 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 1.5e-39 166.4 127 66.9
Lj9C724T6 Lonicera japonica HOM05D005808 ORTHO05D006196 6.4e-38 161.0 135 60.7
Dinv42808 Davidia involucrata HOM05D005808 ORTHO05D006196 1.1e-37 160.2 115 70.4
Dinv43293 Davidia involucrata HOM05D005808 ORTHO05D006196 1.1e-37 160.2 115 70.4
CBR_g8654 Chara braunii HOM05D005808 ORTHO05D006196 1.6e-36 156.4 128 58.6
Actinidia25650 Actinidia chinensis HOM05D005808 ORTHO05D006196 1.5e-34 149.8 102 72.5
SalBow6G0126 Salvia bowleyana HOM05D005808 ORTHO05D006196 4.4e-31 138.3 133 53.4
Actinidia24963 Actinidia chinensis HOM05D005808 ORTHO05D006196 3.7e-30 135.2 97 67.0
Os06g0652300 Oryza sativa ssp. japonica HOM05D005808 ORTHO05D006196 4.9e-30 134.8 132 46.2
Cpa.g.sc43.21 Carica papaya HOM05D005808 ORTHO05D006196 4.1e-29 131.7 86 70.9
CAN.G1190.15 Capsicum annuum HOM05D005808 ORTHO05D006196 6.0e-28 127.9 98 63.3
Oeu024899.1 Olea europaea HOM05D005808 ORTHO05D006196 3.9e-27 125.2 99 64.6
BraA06t24535Z Brassica rapa HOM05D002264 ORTHO05D002413 5.2e-24 114.8 71 78.9
A08p30670 Brassica napus HOM05D002264 ORTHO05D002413 1.2e-23 113.6 105 58.1
GSVIVG01023706001 Vitis vinifera HOM05D005808 ORTHO05D006196 1.5e-23 113.2 83 71.1
HPP92_020611 Vanilla planifolia HOM05D000318 ORTHO05D006196 2.7e-20 102.4 125 45.6
CAN.G1190.14 Capsicum annuum HOM05D005808 ORTHO05D006196 1.9e-18 96.3 84 60.7
BolC8t49459H Brassica oleracea HOM05D002264 ORTHO05D002413 7.1e-13 77.8 71 57.7
Actinidia12360 Actinidia chinensis HOM05D005808 ORTHO05D006196 1.4e-08 63.5 51 62.7
Dinv25996 Davidia involucrata HOM05D000739 ORTHO05D003022 4.4e-07 58.5 90 36.7
Rhsim03G0132500 Rhododendron simsii HOM05D000739 ORTHO05D003022 2.9e-06 55.8 88 36.4
A09p46530 Brassica napus HOM05D000739 ORTHO05D001171 6.4e-06 54.7 106 31.1
BraA09t40118Z Brassica rapa HOM05D000739 ORTHO05D001171 6.4e-06 54.7 106 31.1
Oeu059703.1 Olea europaea HOM05D000739 ORTHO05D003022 6.4e-06 54.7 90 34.4
Actinidia07722 Actinidia chinensis HOM05D000739 ORTHO05D003022 8.4e-06 54.3 87 33.3


User provided reference genes

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