Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-101 373.2 224 100.0
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.5e-73 278.9 238 75.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.6e-72 274.6 238 71.8
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.5e-71 273.5 238 70.6
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 7.5e-68 261.2 227 72.7
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.7e-67 260.0 237 62.4
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.4e-66 256.1 242 62.4
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 5.1e-64 248.4 239 64.0
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 2.6e-60 236.1 233 59.7
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 5.8e-60 235.0 228 60.1
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.4e-58 230.3 235 58.7
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 8.6e-56 221.1 227 60.4
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.1e-55 220.7 240 56.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 5.6e-55 218.4 241 59.8
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.1e-53 214.2 235 56.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.4e-51 204.9 218 64.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 4.6e-41 172.2 235 45.5
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 1.0e-40 171.0 238 45.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.0e-40 169.5 238 46.2
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 4.3e-39 165.6 240 42.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 5.6e-39 165.2 235 44.7
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 7.4e-39 164.9 241 44.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 6.2e-38 161.8 236 43.2
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-37 161.0 238 44.5
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.4e-37 160.6 236 44.9
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.0e-37 159.1 240 45.8
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.9e-37 158.3 241 43.6
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 9.0e-37 157.9 236 44.1
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.0e-36 156.8 194 49.0
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.3e-35 154.1 239 42.7
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.7e-35 153.7 238 44.1
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.8e-35 152.5 194 48.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.4e-35 151.8 241 42.3
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 6.4e-35 151.8 191 47.1
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 8.4e-35 151.4 241 42.3
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.9e-34 150.2 236 39.8
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.9e-34 150.2 168 50.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.9e-34 150.2 238 43.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.4e-34 149.8 239 41.4
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 5.5e-34 148.7 239 41.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 9.3e-34 147.9 193 45.6
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 9.3e-34 147.9 238 41.6
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.5e-33 146.0 193 44.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.6e-33 145.6 230 43.5
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 6.0e-33 145.2 236 41.1
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 7.9e-33 144.8 241 41.1
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 7.9e-33 144.8 264 39.0
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.0e-32 144.4 239 40.6
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.3e-32 144.1 232 40.1
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.3e-32 143.3 224 42.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.9e-32 142.5 235 40.9
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.9e-32 142.5 246 41.1
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 6.7e-32 141.7 238 40.8
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.7e-32 141.7 241 41.1
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.7e-32 141.7 236 41.5
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.1e-31 141.0 246 41.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.5e-31 140.6 239 39.7
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.9e-31 140.2 221 43.4
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.9e-31 140.2 230 42.2
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.9e-31 140.2 229 39.7
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.9e-31 140.2 237 41.4
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.5e-31 139.8 236 41.5
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.3e-31 139.4 238 40.3
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 3.3e-31 139.4 236 40.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.3e-31 139.4 248 39.5
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 4.3e-31 139.0 238 39.1
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.3e-31 139.0 239 41.0
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 5.6e-31 138.7 257 38.1
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 5.6e-31 138.7 246 40.2
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.3e-30 137.5 236 39.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.6e-30 137.1 237 38.8
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-30 136.3 236 38.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-30 136.3 236 38.6
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.8e-30 136.3 235 40.0
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 6.2e-30 135.2 236 38.6
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 6.2e-30 135.2 188 44.1
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.2e-30 135.2 226 38.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.1e-29 134.4 153 49.0
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.8e-29 133.7 195 45.6
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 3.1e-29 132.9 195 42.1
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 3.1e-29 132.9 227 38.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 3.1e-29 132.9 236 40.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 4.0e-29 132.5 287 35.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 6.9e-29 131.7 222 37.4
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.9e-29 131.7 236 38.1
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 9.0e-29 131.3 237 40.5
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-28 131.0 228 36.8
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-28 131.0 228 36.8
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.6e-28 129.8 229 38.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-28 129.4 195 41.5
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-28 129.0 194 41.2
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.5e-28 129.0 255 38.0
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.5e-28 129.0 153 50.3
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.8e-28 128.6 195 47.7
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-27 127.9 195 41.0
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.2e-27 126.7 185 43.8
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-27 126.3 195 46.7
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.9e-27 125.6 241 38.2
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.9e-27 125.6 230 39.6
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.1e-26 124.4 225 36.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.4e-26 124.0 231 38.1
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.5e-26 123.2 178 43.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 7.1e-26 121.7 235 39.1
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 7.1e-26 121.7 192 42.7
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 9.3e-26 121.3 155 47.1
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-25 120.6 179 41.9
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.6e-25 120.6 174 41.4
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 3.5e-25 119.4 165 44.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 6.0e-25 118.6 231 36.8
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 3.9e-24 115.9 156 44.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.7e-24 114.8 223 35.4
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 5.7e-23 112.1 227 35.2
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 9.6e-23 111.3 253 34.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.3e-22 110.9 176 40.3
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.6e-22 110.5 233 35.2
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 4.8e-22 109.0 190 45.8
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-21 107.5 187 38.5
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.4e-21 106.7 240 32.9
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 3.1e-21 106.3 221 37.6
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.0e-21 104.8 159 41.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-20 102.4 192 37.0
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.5e-20 102.4 121 51.2
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-19 101.3 155 41.3
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.5e-19 98.2 172 40.7
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.1e-18 97.8 117 48.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 5.5e-18 95.5 164 43.3
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-17 94.0 155 44.5
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.1e-17 93.6 199 34.7
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 6.7e-16 88.6 80 58.8
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 6.7e-16 88.6 83 57.8
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-15 87.4 85 58.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.7e-15 85.5 154 41.6
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 3.7e-14 82.8 169 34.9
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-13 80.1 162 40.7
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.2e-12 77.8 115 43.5
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.2e-11 73.6 171 34.5
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.4e-10 70.9 140 35.0
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.5e-10 70.1 143 33.6
BraA01t00060Z Brassica rapa HOM05D004487 ORTHO05D032747 1.0e-08 64.7 112 43.8
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.9e-08 62.8 105 41.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.1e-08 62.4 33 87.9
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.1e-08 62.4 33 87.9
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.3e-07 59.7 62 50.0
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.3e-07 59.7 127 31.5
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 3.7e-06 56.2 146 28.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 4.8e-06 55.8 141 28.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-06 55.1 74 40.5


User provided reference genes

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