Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 7.9e-266 920.2 590 100.0
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 3.3e-203 712.2 596 80.9
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 1.2e-197 693.7 627 77.0
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 2.4e-190 669.5 593 77.6
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 3.9e-172 609.0 597 74.0
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 3.5e-165 585.9 613 73.4
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 1.8e-161 573.5 613 72.8
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 6.9e-161 571.6 622 69.9
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 9.0e-161 571.2 613 72.8
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 7.6e-160 568.2 613 71.8
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 1.1e-139 501.1 613 65.9
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 2.5e-102 377.1 590 49.7
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 9.1e-97 358.6 598 48.0
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.7e-87 327.8 599 47.6
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 1.7e-79 301.2 362 55.0
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 2.3e-71 274.2 266 60.5
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 5.1e-63 246.5 206 69.9
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 5.1e-63 246.5 206 69.9
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 2.5e-62 244.2 206 70.4
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 7.1e-57 226.1 636 37.7
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 2.7e-48 197.6 464 34.9
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.0e-47 195.7 329 47.1
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 5.1e-47 193.4 585 31.3
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 1.1e-46 192.2 566 35.7
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 5.3e-44 183.3 511 32.7
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 9.0e-44 182.6 546 36.4
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 1.5e-43 181.8 360 40.8
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 1.4e-41 175.3 520 31.9
BcaNung00932 Brassica carinata HOM05D004950 ORTHO05D004838 1.9e-41 174.9 154 77.3
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.0e-40 169.9 531 34.7
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 2.3e-39 167.9 632 30.1
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 2.3e-39 167.9 607 29.3
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 3.0e-39 167.5 563 30.2
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.9e-39 167.2 532 37.2
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 3.9e-39 167.2 332 44.0
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 3.3e-38 164.1 554 33.9
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 1.4e-36 158.7 566 30.7
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 1.8e-36 158.3 585 30.4
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 3.4e-35 154.1 582 31.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 5.8e-35 153.3 528 30.9
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 7.6e-35 152.9 346 37.6
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.3e-34 152.1 340 39.1
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.9e-33 148.3 516 29.3
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 4.2e-33 147.1 365 35.3
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 5.5e-33 146.7 517 41.6
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 7.1e-33 146.4 575 29.7
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.2e-32 145.6 341 36.1
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 1.6e-32 145.2 336 35.1
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 2.7e-32 144.4 565 34.3
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 3.5e-32 144.1 343 35.3
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 4.6e-32 143.7 533 36.4
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 4.6e-32 143.7 567 29.6
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 7.9e-32 142.9 531 32.4
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 7.9e-32 142.9 343 35.9
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.3e-31 142.1 381 38.8
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.5e-30 138.7 284 38.4
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 1.5e-30 138.7 445 30.6
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 2.5e-30 137.9 354 34.7
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 5.6e-30 136.7 573 28.4
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 5.6e-30 136.7 381 38.3
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 5.6e-30 136.7 283 37.1
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 2.1e-29 134.8 471 29.9
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 4.8e-29 133.7 334 37.7
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 1.4e-28 132.1 342 38.3
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 1.8e-28 131.7 513 34.9
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.8e-28 131.7 571 30.1
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 2.4e-28 131.3 535 28.0
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 3.1e-28 131.0 563 27.7
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.9e-28 129.8 523 31.7
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.9e-28 129.8 523 31.7
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 2.6e-27 127.9 558 29.6
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 7.6e-27 126.3 348 33.0
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.7e-26 125.2 333 34.5
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 1.7e-26 125.2 315 34.0
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 4.9e-26 123.6 182 46.7
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 8.4e-26 122.9 347 34.6
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 1.9e-25 121.7 597 27.8
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 2.5e-25 121.3 260 36.5
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 2.5e-25 121.3 130 53.8
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 5.5e-25 120.2 342 30.4
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 7.1e-25 119.8 573 30.4
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 1.6e-24 118.6 584 32.7
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.6e-24 118.6 350 32.9
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 2.1e-24 118.2 402 30.8
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.1e-24 118.2 575 26.8
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 6.0e-24 116.7 372 32.0
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 2.3e-23 114.8 353 30.0
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 3.9e-23 114.0 557 25.7
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 6.7e-23 113.2 605 28.1
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 6.7e-23 113.2 96 60.4
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.5e-22 112.1 581 26.9
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.9e-22 111.7 106 56.6
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 1.6e-21 108.6 522 26.1
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 2.8e-21 107.8 558 25.1
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 2.8e-21 107.8 630 29.8
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 8.2e-21 106.3 590 27.6
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.1e-20 105.9 606 25.7
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 3.1e-20 104.4 488 29.1
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 3.1e-20 104.4 285 33.0
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 1.5e-19 102.1 555 26.3
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 3.4e-19 100.9 515 26.2
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 7.7e-19 99.8 188 37.8
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 1.0e-18 99.4 332 32.8
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.9e-18 97.8 349 29.2
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 3.8e-18 97.4 317 29.0
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 5.0e-18 97.1 330 30.0
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.1e-17 95.9 342 29.5
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 1.4e-17 95.5 170 37.6
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 3.2e-17 94.4 518 26.3
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 4.2e-17 94.0 392 29.6
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 4.2e-17 94.0 600 31.3
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 2.7e-16 91.3 346 30.3
AL7G13610 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 2.3e-15 88.2 125 54.4
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 5.1e-15 87.0 547 29.6
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.1e-14 85.9 551 26.1
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.5e-14 85.5 624 26.3
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 4.3e-14 84.0 131 37.4
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 7.4e-14 83.2 558 28.3
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.7e-13 82.0 376 27.9
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 2.2e-13 81.6 310 28.4
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 2.2e-13 81.6 128 41.4
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 2.8e-13 81.3 292 30.1
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 3.7e-13 80.9 389 27.5
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 1.1e-12 79.3 378 26.5
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 1.4e-12 79.0 338 28.4
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 5.3e-12 77.0 365 27.4
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 6.9e-12 76.6 111 47.7
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 9.1e-12 76.3 277 35.4
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 2.6e-11 74.7 171 32.2
HPP92_027242 Vanilla planifolia HOM05D004950 ORTHO05D004838 5.9e-11 73.6 125 43.2
CDE10G1352 Ceratophyllum demersum HOM05D004950 ORTHO05D004838 7.7e-11 73.2 200 34.0
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 2.2e-10 71.6 384 24.2
PGSC0003DMG400046241 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.9e-10 71.2 90 44.4
HanXRQChr17g0546381 Helianthus annuus HOM05D004950 ORTHO05D004838 3.8e-10 70.9 74 52.7
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 5.0e-10 70.5 94 51.1
Potri.013G079000 Populus trichocarpa HOM05D002657 ORTHO05D003059 6.5e-10 70.1 196 31.1
Solyc06g072730.4 Solanum lycopersicum HOM05D002657 ORTHO05D003059 1.9e-09 68.6 182 30.2
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.2e-08 65.9 549 24.4
Haze_00384 Corylus avellana HOM05D002657 ORTHO05D003059 1.6e-08 65.5 171 31.6
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 2.7e-08 64.7 304 27.3
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 3.6e-08 64.3 338 27.2
Sp6g27420 Schrenkiella parvula HOM05D002657 ORTHO05D003059 3.6e-08 64.3 189 31.7
Cc01_g00970 Coffea canephora HOM05D002657 ORTHO05D003059 6.1e-08 63.5 182 29.1
BolC2t08249H Brassica oleracea HOM05D002657 ORTHO05D003059 1.0e-07 62.8 160 34.4
COL.COLO4_27289 Corchorus olitorius HOM05D004950 ORTHO05D004838 1.0e-07 62.8 341 30.2
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 1.0e-07 62.8 96 38.5
Thhalv10012674m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 1.4e-07 62.4 194 28.9
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.4e-07 62.4 356 26.4
Cfa016065 Carpinus fangiana HOM05D002657 ORTHO05D003059 1.8e-07 62.0 174 29.9
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 5.1e-07 60.5 76 51.3
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.8e-07 59.7 342 28.7
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 8.8e-07 59.7 131 29.0
Carub.0003s0206 Capsella rubella HOM05D002657 ORTHO05D003059 1.1e-06 59.3 196 28.1
CARHR196450 Cardamine hirsuta HOM05D002657 ORTHO05D003059 1.1e-06 59.3 194 27.3
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.1e-06 59.3 239 33.5
AL3G12390 Arabidopsis lyrata HOM05D002657 ORTHO05D003059 1.5e-06 58.9 213 27.2
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 3.3e-06 57.8 336 23.8
Thhalv10020078m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 5.7e-06 57.0 196 28.1
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 7.4e-06 56.6 239 31.8
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 7.4e-06 56.6 357 23.5
A03p07920 Brassica napus HOM05D002657 ORTHO05D003059 9.7e-06 56.2 193 29.5


User provided reference genes

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