Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 7.5e-178 627.1 322 100.0
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.6e-157 557.8 323 89.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.9e-153 545.4 322 87.3
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.0e-150 537.0 326 86.2
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.7e-150 536.2 324 87.0
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.3e-148 530.0 325 85.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.8e-145 518.5 322 82.6
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.8e-145 518.5 320 83.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 3.8e-145 518.5 321 83.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-144 516.9 324 82.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.1e-143 512.7 324 82.4
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 7.9e-143 510.8 320 82.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.4e-138 495.4 355 74.6
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.7e-129 466.5 324 77.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.6e-103 380.2 325 63.7
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.0e-89 334.3 311 55.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 9.4e-88 327.8 311 55.3
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-87 326.6 313 55.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 8.0e-87 324.7 283 59.4
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.0e-86 324.3 279 59.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.8e-86 323.6 325 54.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.8e-86 323.6 326 53.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.3e-86 323.2 327 53.5
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 4.0e-86 322.4 322 55.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 3.4e-85 319.3 269 59.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 3.4e-85 319.3 321 54.2
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.7e-85 318.5 309 53.7
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.7e-85 318.5 281 59.4
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 7.5e-85 318.2 269 59.1
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.8e-85 317.8 307 54.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-84 317.0 270 60.7
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.7e-84 317.0 305 54.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.2e-84 316.6 325 54.8
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.2e-84 316.6 266 59.8
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 2.8e-84 316.2 323 50.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 3.7e-84 315.8 279 57.0
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.4e-83 313.9 271 57.6
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.4e-83 313.9 327 51.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.1e-83 312.8 310 52.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 5.4e-83 312.0 307 53.4
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.0e-83 311.6 271 59.4
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.0e-83 311.6 271 59.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 9.1e-83 311.2 271 57.2
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-82 310.8 286 55.2
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 3.5e-82 309.3 326 51.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.5e-82 308.9 270 54.4
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.9e-82 308.5 311 53.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.7e-82 308.1 321 52.6
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-81 307.4 274 54.0
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.8e-81 305.8 275 55.3
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.8e-81 305.8 323 49.2
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.8e-81 305.8 324 50.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 5.0e-81 305.4 276 55.4
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.1e-80 304.3 332 51.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.9e-80 303.5 269 56.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 3.2e-80 302.8 267 56.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.2e-80 302.8 282 53.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.2e-80 302.8 276 56.5
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.2e-80 302.8 277 53.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.2e-80 302.4 282 55.0
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 5.5e-80 302.0 271 54.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 7.2e-80 301.6 319 50.8
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.2e-79 300.8 271 55.4
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.1e-79 300.1 267 57.3
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.7e-79 299.7 322 50.9
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 4.7e-79 298.9 274 56.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 8.0e-79 298.1 284 52.1
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.0e-78 297.7 269 53.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.4e-78 297.4 274 56.6
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.2e-78 295.4 320 51.2
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.2e-78 295.4 305 49.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.8e-78 295.0 266 56.0
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 8.8e-78 294.7 308 49.4
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 8.8e-78 294.7 320 48.8
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.2e-77 294.3 306 48.7
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.5e-77 293.9 325 49.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.0e-77 293.5 268 54.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.6e-77 293.1 274 52.2
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.7e-77 292.0 322 51.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 8.3e-76 288.1 320 46.6
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.3e-76 288.1 320 46.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.1e-75 287.7 291 49.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.1e-75 286.2 299 50.5
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 5.4e-75 285.4 302 52.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 9.2e-75 284.6 269 51.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-74 283.9 269 53.2
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.7e-74 283.1 318 46.5
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.5e-74 282.3 269 50.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 7.7e-74 281.6 324 48.8
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.7e-73 280.4 302 51.0
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 5.0e-73 278.9 302 50.7
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 8.6e-73 278.1 309 46.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.9e-72 276.9 326 49.1
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.4e-70 270.8 291 49.8
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 8.9e-70 268.1 275 48.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 3.4e-69 266.2 316 47.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 7.0e-67 258.5 293 48.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 9.2e-67 258.1 310 44.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.0e-65 254.6 308 46.4
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 5.0e-65 252.3 319 46.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 8.6e-65 251.5 311 44.1
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.1e-64 251.1 319 46.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-64 250.8 262 53.4
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 4.3e-64 249.2 317 44.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.6e-64 248.8 308 43.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.8e-63 246.5 267 47.6
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.0e-62 244.6 269 46.8
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.8e-62 243.8 271 46.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.3e-62 243.4 273 47.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.9e-62 241.5 276 46.0
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.8e-61 238.0 324 42.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.2e-59 233.0 269 44.6
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-59 232.6 207 56.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.5e-58 229.6 301 43.5
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-57 225.3 206 57.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-57 225.3 206 57.3
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.3e-56 223.0 268 45.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.6e-55 220.7 200 57.0
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.8e-55 219.9 264 44.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.7e-55 219.2 276 42.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.2e-55 218.8 246 48.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.1e-54 218.0 252 46.0
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.3e-54 216.9 217 52.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.3e-54 216.9 266 45.1
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.6e-50 204.1 274 42.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.9e-49 199.5 262 40.8
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.8e-47 193.4 239 41.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.6e-45 185.3 288 39.2
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.8e-44 183.0 299 37.8
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.9e-43 180.6 175 52.0
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.8e-42 175.3 265 37.4
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.0e-41 174.9 180 52.2
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.1e-40 171.4 284 34.2
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.9e-40 170.6 270 35.6
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.2e-39 167.9 263 37.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.2e-39 165.6 303 35.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.9e-27 127.5 208 38.0
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 6.2e-23 112.5 97 58.8
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.2e-19 100.1 132 43.2
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.7e-17 92.4 66 65.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.7e-17 92.4 66 65.2
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.3e-14 82.8 207 30.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.5e-13 81.3 75 52.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 4.5e-13 79.7 268 28.4
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.5e-13 79.7 135 35.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.9e-12 77.0 266 29.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 3.8e-12 76.6 264 26.9
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-10 71.2 87 42.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.7e-09 65.9 94 39.4


User provided reference genes

Program Settings