Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 5.8e-249 864.0 508 100.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.7e-200 703.0 511 81.4
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 8.2e-187 657.5 509 80.4
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.2e-183 645.2 513 77.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 6.1e-182 641.3 529 76.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.6e-174 616.7 514 77.6
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 6.7e-173 611.3 521 76.0
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 4.1e-170 602.1 537 72.4
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.0e-168 597.4 519 73.0
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 6.3e-155 551.6 519 69.2
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 8.9e-149 531.2 513 70.8
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.6e-137 493.8 490 70.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 6.2e-134 481.9 482 68.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 2.0e-132 476.9 514 59.5
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 4.7e-126 455.7 490 66.5
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 6.4e-123 445.3 520 56.9
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.2e-122 441.4 509 60.5
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.7e-121 439.9 517 58.6
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.0e-120 436.4 509 60.7
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.1e-120 435.6 509 60.7
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 8.6e-120 434.9 408 70.8
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.8e-118 429.9 504 54.0
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 4.7e-118 429.1 508 56.7
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 4.0e-117 426.0 503 57.7
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.0e-117 426.0 489 55.8
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.4e-116 422.9 521 55.1
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.4e-116 422.9 513 57.3
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-115 420.2 506 55.1
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.1e-114 417.9 491 55.6
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-114 417.5 483 53.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.4e-114 415.6 506 57.1
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.7e-113 413.3 486 53.1
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 3.5e-113 412.9 508 56.5
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 4.6e-113 412.5 453 56.1
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 6.0e-113 412.1 517 54.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 2.3e-112 410.2 481 59.0
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-111 407.9 507 56.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.3e-111 406.4 473 55.8
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 7.3e-111 405.2 488 52.7
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 7.3e-111 405.2 505 52.7
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.6e-111 404.8 505 52.7
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.8e-110 403.3 517 54.5
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 9.0e-109 398.3 484 56.4
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.2e-108 397.9 498 52.8
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.5e-108 397.5 485 56.1
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.5e-108 397.5 513 56.7
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 4.4e-108 396.0 482 54.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 5.8e-108 395.6 490 56.7
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 5.8e-108 395.6 486 51.0
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 8.4e-107 391.7 480 55.8
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.9e-106 390.6 510 52.7
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 3.2e-106 389.8 517 52.6
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 7.1e-106 388.7 484 54.8
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 9.3e-106 388.3 496 55.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.2e-105 387.9 482 52.9
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.1e-105 387.1 493 56.2
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 4.3e-103 379.4 470 51.5
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 5.6e-103 379.0 504 52.2
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.1e-101 374.8 475 55.6
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.4e-101 374.4 520 51.0
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.4e-101 373.6 475 55.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 6.9e-101 372.1 505 48.1
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 4.5e-100 369.4 488 53.3
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.9e-99 366.7 507 52.9
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 4.9e-99 365.9 481 50.3
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 9.3e-98 361.7 506 46.8
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.7e-97 360.1 443 56.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.8e-96 357.5 508 51.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.3e-96 357.1 480 49.6
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.7e-96 355.1 512 49.6
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 8.7e-96 355.1 512 49.8
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-94 351.3 512 49.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 6.2e-94 349.0 513 47.4
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.8e-93 347.4 500 49.0
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.0e-92 344.0 500 51.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 3.4e-92 343.2 500 48.0
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 3.4e-92 343.2 507 47.5
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.4e-92 343.2 473 53.3
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 3.4e-92 343.2 505 49.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 4.5e-92 342.8 551 47.4
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.0e-91 341.7 507 48.5
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.7e-91 340.9 540 48.7
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.7e-91 340.9 509 49.1
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.2e-91 340.5 475 48.2
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.8e-91 339.7 593 44.0
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.4e-90 337.8 296 76.0
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.9e-90 337.4 485 51.8
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.9e-90 337.4 509 50.3
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.5e-90 337.0 473 52.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.7e-89 333.6 510 46.5
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.1e-88 329.3 506 46.4
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.5e-87 327.8 520 43.1
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.9e-87 327.4 521 48.6
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 7.4e-87 325.5 503 47.7
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 9.6e-87 325.1 516 47.7
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 9.6e-87 325.1 499 49.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.8e-86 322.8 345 61.4
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.8e-85 320.9 436 49.5
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.9e-85 318.9 483 49.5
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.2e-84 318.2 436 49.8
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.5e-84 317.8 409 50.1
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.0e-84 317.4 485 46.2
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-83 313.5 500 52.0
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 2.9e-83 313.5 506 47.4
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.4e-82 311.2 477 49.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.3e-80 304.7 501 45.7
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 3.9e-80 303.1 507 47.1
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 1.9e-79 300.8 484 49.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 2.2e-78 297.4 487 44.1
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 4.8e-78 296.2 480 48.8
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 2.0e-76 290.8 486 46.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 5.9e-76 289.3 371 52.3
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.0e-75 288.5 508 43.1
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.9e-75 287.0 549 41.2
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.8e-72 277.7 473 44.8
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.3e-70 271.6 449 43.0
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-68 264.2 284 55.3
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.7e-65 253.1 579 38.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 6.1e-65 252.7 250 63.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.5e-63 248.1 281 56.6
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 8.2e-62 242.3 485 38.8
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.7e-59 234.6 517 36.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 7.2e-58 229.2 458 40.2
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 8.8e-56 222.2 300 48.7
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 3.3e-55 220.3 444 41.4
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.0e-52 211.1 501 37.3
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 2.3e-48 197.6 416 42.3
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 3.2e-42 177.2 183 68.3
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 8.0e-41 172.6 473 31.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 7.5e-39 166.0 472 31.4
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.2e-36 158.7 285 39.3
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 3.7e-30 137.1 428 32.9
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 5.9e-28 129.8 196 45.9
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.2e-25 122.1 470 29.8
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.7e-22 111.7 100 58.0
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 5.4e-21 106.7 153 59.5
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.0e-19 100.9 66 71.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 3.9e-19 100.5 93 60.2
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 5.6e-18 96.7 210 38.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.8e-16 91.7 221 31.7
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 8.9e-16 89.4 77 58.4
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 8.9e-16 89.4 75 57.3
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.2e-14 84.7 200 37.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.1e-13 79.7 140 36.4
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 2.7e-12 77.8 185 33.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.6e-12 77.0 209 34.0
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.0e-11 74.3 352 29.3
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 6.6e-11 73.2 164 35.4
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.1e-10 72.4 206 35.0
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.9e-10 71.6 151 37.1
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 4.7e-09 67.0 72 50.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 2.3e-08 64.7 266 32.7
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.1e-08 64.3 206 34.5
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 3.4e-07 60.8 277 27.1
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 4.4e-07 60.5 107 37.4
Cre06.g280800 Chlamydomonas reinhardtii HOM05D004401 ORTHO05D005169 7.6e-07 59.7 274 29.6


User provided reference genes

Program Settings