Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.8e-75 285.8 141 100.0
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 2.1e-60 235.7 135 83.7
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 4.8e-60 234.6 135 84.4
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 4.8e-60 234.6 135 84.4
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 1.1e-59 233.4 142 81.0
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 1.1e-59 233.4 142 81.0
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 6.9e-59 230.7 132 84.8
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 9.0e-59 230.3 134 81.3
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 2.6e-58 228.8 134 80.6
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 7.6e-58 227.3 136 82.4
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 2.2e-57 225.7 132 83.3
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 8.4e-57 223.8 134 80.6
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 3.2e-56 221.9 133 82.0
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 2.8e-52 208.8 132 74.2
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 4.8e-44 181.4 122 69.7
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 2.0e-42 176.0 136 66.2
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 4.6e-39 164.9 120 65.0
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 3.9e-38 161.8 121 61.2
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 5.1e-38 161.4 123 61.8
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 8.7e-38 160.6 119 63.0
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 1.1e-37 160.2 125 60.8
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 1.9e-37 159.5 119 63.9
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 1.9e-37 159.5 131 59.5
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.5e-37 159.1 119 61.3
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 3.3e-37 158.7 133 57.1
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 4.3e-37 158.3 130 56.9
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 7.4e-37 157.5 124 58.1
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 1.6e-36 156.4 123 60.2
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 1.6e-36 156.4 112 65.2
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 2.1e-36 156.0 110 63.6
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 3.7e-36 155.2 117 60.7
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 6.3e-36 154.5 123 61.8
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 1.4e-35 153.3 127 58.3
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.4e-35 153.3 114 62.3
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.8e-35 152.9 105 65.7
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.8e-35 152.9 105 65.7
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 2.4e-35 152.5 116 61.2
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 2.4e-35 152.5 133 57.9
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 4.1e-35 151.8 121 59.5
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 5.3e-35 151.4 112 64.3
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 5.3e-35 151.4 112 64.3
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 6.9e-35 151.0 142 59.9
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 6.9e-35 151.0 142 59.9
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 1.2e-34 150.2 129 56.6
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 1.2e-34 150.2 124 55.6
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 1.2e-34 150.2 115 60.9
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.5e-34 149.8 102 66.7
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 1.5e-34 149.8 110 63.6
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 2.0e-34 149.4 110 59.1
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 2.6e-34 149.1 112 63.4
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 2.6e-34 149.1 112 62.5
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 7.6e-34 147.5 96 70.8
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 7.6e-34 147.5 96 70.8
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 1.3e-33 146.7 117 58.1
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 2.2e-33 146.0 105 65.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.2e-33 146.0 102 62.7
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 3.8e-33 145.2 116 60.3
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 5.0e-33 144.8 130 53.1
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 5.0e-33 144.8 126 56.3
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 6.5e-33 144.4 96 67.7
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 8.5e-33 144.1 108 63.9
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 8.5e-33 144.1 96 67.7
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 8.5e-33 144.1 102 62.7
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 8.5e-33 144.1 103 66.0
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 1.1e-32 143.7 90 68.9
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 1.1e-32 143.7 96 68.8
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 1.4e-32 143.3 116 56.9
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 1.4e-32 143.3 128 51.6
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 1.4e-32 143.3 96 67.7
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 3.2e-32 142.1 104 64.4
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.2e-32 142.1 127 55.1
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 4.2e-32 141.7 85 75.3
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 5.5e-32 141.4 108 63.0
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 5.5e-32 141.4 95 67.4
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 7.2e-32 141.0 107 64.5
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 9.3e-32 140.6 107 63.6
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 9.3e-32 140.6 95 67.4
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.2e-31 140.2 107 63.6
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 2.1e-31 139.4 127 55.1
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 2.1e-31 139.4 119 57.1
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 3.6e-31 138.7 94 69.1
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 3.6e-31 138.7 96 65.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 6.1e-31 137.9 126 56.3
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 6.1e-31 137.9 90 68.9
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 6.1e-31 137.9 127 52.0
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 7.9e-31 137.5 122 55.7
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 3.0e-30 135.6 94 69.1
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 1.9e-29 132.9 111 57.7
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 1.9e-29 132.9 107 57.9
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 3.7e-28 128.6 92 62.0
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 4.8e-28 128.3 116 50.0
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 1.4e-27 126.7 86 66.3
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.1e-27 125.6 108 55.6
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 4.1e-27 125.2 99 61.6
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 2.0e-26 122.9 74 71.6
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 7.7e-26 120.9 80 68.8
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 1.0e-25 120.6 136 43.4
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.0e-25 120.6 104 53.8
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.7e-25 119.8 104 54.8
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 5.0e-25 118.2 112 51.8
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 9.4e-24 114.0 109 53.2
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 3.6e-23 112.1 91 56.0
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 7.9e-23 110.9 99 49.5
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 1.0e-22 110.5 78 62.8
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 1.4e-22 110.2 72 70.8
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 2.3e-22 109.4 83 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 4.4e-21 105.1 99 48.5
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 2.2e-20 102.8 100 49.0
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.2e-20 102.8 85 57.6
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 6.3e-20 101.3 92 53.3
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 1.8e-19 99.8 119 41.2
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 3.1e-19 99.0 71 63.4
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.6e-15 86.7 71 53.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 1.4e-14 83.6 82 50.0
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 1.3e-12 77.0 72 52.8
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 2.2e-12 76.3 60 60.0
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.2e-12 76.3 80 50.0
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 4.8e-12 75.1 91 40.7
AL6G20580 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 7.0e-11 71.2 42 83.3
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 1.9e-08 63.2 46 63.0


User provided reference genes

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