Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.9e-75 285.8 147 100.0
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 9.6e-72 273.5 147 95.2
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.4e-70 268.9 148 93.9
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 9.0e-70 266.9 148 93.2
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 5.8e-69 264.2 147 93.9
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.3e-64 248.4 153 87.6
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.0e-61 239.2 152 82.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 8.2e-55 217.2 148 79.7
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 8.2e-55 217.2 148 79.7
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 3.1e-54 215.3 147 79.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.6e-53 212.2 147 78.2
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 3.4e-53 211.8 147 78.2
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.0e-48 196.1 147 70.1
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.2e-45 186.8 148 70.3
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.0e-36 157.1 144 64.6
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.3e-36 156.8 147 63.9
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 5.0e-36 154.8 144 63.9
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.5e-35 153.3 144 63.2
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-35 153.3 144 63.2
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.5e-35 153.3 144 63.2
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.9e-35 152.9 145 62.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.2e-35 152.1 142 61.3
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 5.5e-35 151.4 142 62.7
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.7e-34 148.3 141 60.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.3e-33 146.0 140 58.6
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.3e-33 146.0 140 58.6
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 6.7e-33 144.4 144 62.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 6.7e-33 144.4 142 57.7
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.3e-31 140.2 140 57.9
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-30 137.1 144 50.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-30 137.1 144 50.7
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.8e-30 136.3 134 53.0
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.4e-30 136.0 122 59.8
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.1e-30 135.6 145 53.1
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 4.1e-30 135.2 142 60.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 5.3e-30 134.8 154 50.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 7.0e-30 134.4 118 57.6
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 7.0e-30 134.4 132 52.3
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.1e-30 134.0 134 52.2
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.1e-30 134.0 144 52.1
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.6e-29 133.3 134 51.5
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.6e-29 133.3 130 56.2
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.7e-29 132.5 149 51.0
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 3.5e-29 132.1 118 61.0
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.5e-29 131.7 132 54.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 5.9e-29 131.3 125 60.0
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 7.7e-29 131.0 132 53.0
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.0e-28 130.6 118 61.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.0e-28 130.6 134 54.5
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.3e-28 130.2 133 54.9
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.3e-28 130.2 146 53.4
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.3e-28 130.2 132 53.8
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.3e-28 130.2 127 54.3
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.7e-28 129.8 120 57.5
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.7e-28 129.8 140 50.0
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.2e-28 129.4 133 51.1
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.2e-28 129.4 158 47.5
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.9e-28 129.0 128 54.7
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 6.5e-28 127.9 151 49.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 6.5e-28 127.9 133 52.6
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 8.5e-28 127.5 134 53.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.1e-27 127.1 145 49.7
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.5e-27 126.7 137 51.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.5e-27 126.7 137 51.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.9e-27 126.3 123 50.4
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 4.2e-27 125.2 136 50.0
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 5.5e-27 124.8 133 50.4
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 5.5e-27 124.8 127 50.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 7.2e-27 124.4 132 52.3
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 7.2e-27 124.4 125 57.6
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.2e-26 123.6 133 50.4
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.6e-26 123.2 149 47.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 2.1e-26 122.9 125 56.8
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 6.1e-26 121.3 144 50.7
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 8.0e-26 120.9 141 47.5
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.0e-25 120.6 149 45.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.4e-25 120.2 122 52.5
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 1.4e-25 120.2 132 49.2
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.3e-25 119.4 144 47.9
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-25 119.4 135 47.4
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 6.8e-25 117.9 134 49.3
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.8e-25 117.5 155 45.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 4.4e-24 115.2 151 46.4
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.5e-24 114.4 139 45.3
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.5e-24 114.4 133 48.9
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 9.8e-24 114.0 138 47.8
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.2e-23 112.8 134 45.5
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.2e-23 112.8 133 45.9
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.7e-23 112.1 148 41.9
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 4.8e-23 111.7 128 46.1
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.8e-23 111.7 134 45.5
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 6.3e-23 111.3 148 43.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.4e-22 109.4 118 50.0
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 3.1e-22 109.0 128 51.6
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.1e-22 108.6 143 39.9
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.2e-21 107.1 137 43.1
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.2e-21 107.1 141 46.1
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.6e-21 106.7 137 43.8
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.6e-21 106.7 135 43.7
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.0e-21 106.3 158 39.2
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.5e-21 105.5 92 56.5
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.5e-21 105.5 107 48.6
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-20 104.0 130 43.1
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.3e-20 103.6 141 47.5
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.9e-20 102.4 132 45.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 5.0e-20 101.7 134 43.3
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-19 100.1 129 45.7
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 2.5e-19 99.4 154 37.7
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 3.3e-19 99.0 64 56.2
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 4.2e-19 98.6 154 37.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 5.5e-19 98.2 146 39.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.6e-18 96.7 126 46.8
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.6e-18 96.7 129 47.3
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 4.7e-18 95.1 91 64.8
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 4.7e-18 95.1 91 64.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.7e-18 95.1 126 46.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.4e-17 93.6 144 40.3
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.8e-17 93.2 106 47.2
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 3.0e-17 92.4 66 57.6
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 5.2e-17 91.7 150 36.7
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 6.8e-17 91.3 129 43.4
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.5e-16 90.1 155 36.8
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.6e-16 89.4 65 50.8
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.4e-16 89.0 98 50.0
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 9.8e-16 87.4 125 44.0
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.7e-15 86.7 100 43.0
BcaNung06456 Brassica carinata HOM05D005114 ORTHO05D021810 3.7e-15 85.5 90 58.9
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.1e-14 82.0 119 39.5
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 5.4e-14 81.6 113 38.1
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 7.0e-14 81.3 112 42.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.7e-13 79.3 128 39.8
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.7e-13 79.3 80 46.2
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-12 76.3 120 40.0
Aa31LG8G14660 Aethionema arabicum HOM05D005114 ORTHO05D006301 6.1e-10 68.2 140 42.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 6.1e-10 68.2 53 50.9
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 6.1e-10 68.2 130 33.8
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.0e-09 67.4 136 33.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.5e-08 63.5 111 39.6
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 9.8e-08 60.8 126 38.1
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.9e-06 56.6 137 29.2
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.2e-06 54.3 52 46.2
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 9.2e-06 54.3 140 32.9


User provided reference genes

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