Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 1.1e-69 266.5 133 100.0
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 2.9e-67 258.5 133 95.5
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 1.4e-66 256.1 133 94.7
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 2.5e-66 255.4 133 94.7
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 2.5e-66 255.4 133 94.0
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 2.5e-66 255.4 133 94.0
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 7.1e-66 253.8 133 94.0
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 6.3e-62 240.7 133 89.5
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 2.2e-59 232.3 137 85.4
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 3.8e-51 204.9 105 93.3
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 8.5e-51 203.8 133 72.2
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 9.4e-50 200.3 133 69.9
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 9.4e-50 200.3 133 70.7
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 9.4e-50 200.3 133 71.4
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 2.1e-49 199.1 133 70.7
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 3.6e-49 198.4 133 69.9
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 4.7e-49 198.0 133 69.9
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 4.7e-49 198.0 133 69.9
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 1.0e-48 196.8 133 68.4
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 1.0e-48 196.8 133 68.4
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 1.4e-48 196.4 133 69.9
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 1.8e-48 196.1 131 69.5
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 1.8e-48 196.1 133 69.2
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 2.3e-48 195.7 128 71.1
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 3.0e-48 195.3 133 70.7
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 3.9e-48 194.9 133 67.7
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 3.9e-48 194.9 133 69.9
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 5.1e-48 194.5 133 67.7
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 6.7e-48 194.1 133 69.2
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 6.7e-48 194.1 133 67.7
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.1e-47 193.4 132 68.9
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 1.5e-47 193.0 133 69.2
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 2.0e-47 192.6 133 66.9
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 2.6e-47 192.2 133 66.9
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 2.6e-47 192.2 132 68.9
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 3.3e-47 191.8 133 68.4
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 3.3e-47 191.8 133 68.4
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 3.3e-47 191.8 133 68.4
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 3.3e-47 191.8 131 67.9
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 9.7e-47 190.3 133 65.4
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 9.7e-47 190.3 133 68.4
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 1.3e-46 189.9 133 68.4
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 1.7e-46 189.5 105 86.7
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 2.2e-46 189.1 128 68.8
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 2.2e-46 189.1 133 66.2
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 2.2e-46 189.1 140 67.1
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 66.9
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 2.8e-46 188.7 133 67.7
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 3.7e-46 188.3 133 66.2
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 3.7e-46 188.3 133 66.2
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 6.3e-46 187.6 133 66.9
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 8.2e-46 187.2 133 65.4
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 1.8e-45 186.0 133 66.9
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 2.4e-45 185.7 133 63.9
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 4.1e-45 184.9 133 66.9
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 5.3e-45 184.5 133 66.9
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 1.5e-44 183.0 128 66.4
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 2.0e-44 182.6 133 67.7
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 3.5e-44 181.8 133 64.7
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 1.3e-43 179.9 116 72.4
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 2.2e-43 179.1 139 64.7
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 3.2e-42 175.3 134 64.2
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 4.2e-42 174.9 118 67.8
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 3.6e-41 171.8 133 60.9
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 4.7e-41 171.4 133 61.7
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 4.7e-41 171.4 113 69.9
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 4.7e-41 171.4 128 61.7
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 8.0e-41 170.6 113 70.8
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 1.0e-40 170.2 133 61.7
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 1.0e-40 170.2 181 50.3
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 2.0e-39 166.0 114 66.7
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 9.7e-39 163.7 133 57.1
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 2.8e-38 162.2 114 64.9
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 1.8e-37 159.5 105 69.5
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 1.7e-35 152.9 128 58.6
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 2.2e-35 152.5 101 66.3
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 5.0e-35 151.4 128 58.6
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 8.5e-35 150.6 98 71.4
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 1.5e-34 149.8 121 55.4
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 2.5e-34 149.1 132 52.3
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 4.2e-34 148.3 105 64.8
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 9.4e-34 147.1 96 70.8
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 1.8e-32 142.9 103 65.0
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 4.0e-32 141.7 92 70.7
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 3.4e-31 138.7 96 64.6
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 2.4e-29 132.5 121 53.7
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 3.8e-27 125.2 133 53.4
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 3.6e-25 118.6 133 51.1
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 3.6e-25 118.6 110 46.4
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 1.2e-23 113.6 118 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 8.3e-22 107.5 111 45.9
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 3.1e-21 105.5 132 40.9
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 2.0e-20 102.8 70 68.6
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 1.3e-19 100.1 102 49.0
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 1.9e-18 96.3 128 41.4
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 1.4e-16 90.1 59 71.2
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 7.5e-15 84.3 67 61.2
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 7.0e-13 77.8 83 43.4
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 1.5e-10 70.1 47 59.6
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 2.0e-07 59.7 68 42.6
Medtr2g093710 Medicago truncatula HOM05D007407 ORTHO05D009298 1.3e-06 57.0 103 34.0
unitig_747.g21224 Utricularia gibba HOM05D007407 ORTHO05D009298 1.7e-06 56.6 36 66.7
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 3.7e-06 55.5 54 55.6


User provided reference genes

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