Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 2.4e-50 201.8 100 100.0
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 9.5e-39 163.3 102 84.3
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 7.6e-36 153.7 101 80.2
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 9.9e-36 153.3 101 82.2
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 2.5e-31 138.7 101 71.3
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 2.5e-31 138.7 101 71.3
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 9.6e-31 136.7 102 69.6
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 9.6e-31 136.7 102 69.6
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 6.2e-30 134.0 103 69.9
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 1.1e-29 133.3 101 69.3
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 1.1e-29 133.3 101 69.3
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 2.4e-29 132.1 101 68.3
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 3.1e-29 131.7 99 69.7
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 9.0e-29 130.2 95 70.5
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 2.0e-28 129.0 103 68.9
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 1.1e-23 113.2 91 65.9
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 2.5e-15 85.5 66 68.2
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 1.6e-14 82.8 94 52.1
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 2.5e-10 68.9 54 64.8
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.0e-08 63.5 97 43.3
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.0e-08 62.0 97 43.3
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 3.9e-08 61.6 103 42.7
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 5.1e-08 61.2 98 39.8
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 6.7e-08 60.8 92 39.1
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 6.7e-08 60.8 102 41.2
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.1e-07 60.1 92 39.1
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 2.5e-07 58.9 93 39.8
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.3e-07 58.5 100 43.0
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 4.3e-07 58.2 96 41.7
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 4.3e-07 58.2 103 41.7
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 4.3e-07 58.2 103 40.8
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 4.3e-07 58.2 96 40.6
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 7.4e-07 57.4 101 39.6
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 7.4e-07 57.4 100 41.0
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 1.3e-06 56.6 74 40.5
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.6e-06 56.2 101 42.6
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.6e-06 56.2 100 36.0
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.6e-06 56.2 111 38.7
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 2.1e-06 55.8 91 36.3
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 2.8e-06 55.5 97 37.1
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 4.8e-06 54.7 95 40.0
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 4.8e-06 54.7 101 40.6
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 4.8e-06 54.7 47 51.1
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 6.2e-06 54.3 91 39.6
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 6.2e-06 54.3 101 41.6
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 6.2e-06 54.3 91 39.6
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 8.2e-06 53.9 59 47.5


User provided reference genes

Program Settings