Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.1e-136 489.2 281 100.0
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 3.2e-68 262.7 281 66.5
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 8.3e-64 248.1 281 65.1
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.3e-61 240.0 285 55.4
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.8e-58 230.3 279 60.2
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 2.6e-57 226.5 282 52.1
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 2.6e-57 226.5 279 61.3
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.3e-56 224.2 293 44.0
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 4.9e-56 222.2 280 50.4
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 2.4e-55 219.9 280 52.1
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 3.2e-55 219.5 280 51.1
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 3.2e-55 219.5 281 59.1
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 4.1e-55 219.2 277 56.0
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.0e-53 214.5 279 59.9
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 1.3e-53 214.2 281 59.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 2.3e-53 213.4 281 58.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 3.0e-53 213.0 282 59.6
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 3.0e-53 213.0 281 55.5
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 3.9e-53 212.6 281 58.7
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 5.0e-53 212.2 281 58.7
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 5.0e-53 212.2 279 60.2
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 6.6e-53 211.8 279 59.9
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 8.6e-53 211.5 281 58.7
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 1.5e-52 210.7 279 59.1
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 1.9e-52 210.3 281 58.4
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 4.3e-52 209.1 277 58.8
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 5.6e-52 208.8 279 54.1
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 9.5e-52 208.0 281 58.7
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.6e-51 207.2 281 58.4
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 2.8e-51 206.5 279 58.8
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 3.6e-51 206.1 279 57.7
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.7e-51 205.7 288 48.6
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 6.2e-51 205.3 277 58.1
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 8.0e-51 204.9 287 39.4
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.1e-50 204.5 277 58.5
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.4e-50 204.1 279 58.1
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 1.4e-50 204.1 279 57.0
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 1.4e-50 204.1 282 57.8
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.4e-50 204.1 278 58.6
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.8e-50 203.8 281 57.7
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-50 203.8 288 48.6
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 2.3e-50 203.4 280 58.2
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.1e-50 203.0 288 48.3
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 3.1e-50 203.0 281 56.9
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 3.1e-50 203.0 277 57.8
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 4.0e-50 202.6 279 55.9
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 6.8e-50 201.8 301 47.8
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.2e-49 201.1 281 56.6
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.2e-49 201.1 281 56.9
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 1.5e-49 200.7 277 57.8
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 1.5e-49 200.7 283 39.6
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.6e-49 199.9 213 51.6
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 2.6e-49 199.9 279 57.7
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 4.4e-49 199.1 282 56.7
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 7.5e-49 198.4 205 46.8
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 7.5e-49 198.4 281 57.3
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 7.5e-49 198.4 282 50.0
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 9.8e-49 198.0 277 57.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.7e-48 197.2 279 55.6
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 1.7e-48 197.2 279 56.6
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 2.2e-48 196.8 279 57.3
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 3.7e-48 196.1 279 56.3
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 3.7e-48 196.1 279 57.3
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 3.7e-48 196.1 279 57.3
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 4.9e-48 195.7 279 57.3
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.9e-48 195.7 279 56.3
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 6.4e-48 195.3 277 57.4
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 1.1e-47 194.5 279 56.6
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.1e-47 194.5 279 56.3
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 1.4e-47 194.1 277 57.0
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 1.9e-47 193.7 279 55.9
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 1.9e-47 193.7 280 55.4
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.9e-47 193.7 279 55.9
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 2.4e-47 193.4 279 54.8
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 3.2e-47 193.0 277 55.6
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 4.1e-47 192.6 171 58.5
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 7.0e-47 191.8 279 55.6
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 9.2e-47 191.4 171 58.5
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 9.2e-47 191.4 171 58.5
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 9.2e-47 191.4 281 55.2
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 1.2e-46 191.0 289 55.4
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 2.0e-46 190.3 171 57.9
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 2.0e-46 190.3 311 53.1
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 6.0e-46 188.7 280 57.1
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.0e-45 188.0 280 50.0
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 8.6e-45 184.9 280 55.7
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 1.1e-44 184.5 277 54.9
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 1.5e-44 184.1 255 56.1
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.5e-44 184.1 281 48.0
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 1.9e-44 183.7 276 55.8
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 7.3e-44 181.8 281 53.7
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.6e-43 180.6 282 47.2
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.1e-43 180.3 288 45.8
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 3.6e-43 179.5 281 52.3
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 6.2e-43 178.7 279 55.2
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 6.2e-43 178.7 279 54.1
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 6.2e-43 178.7 284 45.1
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.2e-43 178.7 325 51.1
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 8.9e-42 174.9 281 46.6
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.5e-41 174.1 281 46.3
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 7.5e-41 171.8 277 53.8
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.3e-40 171.0 155 71.0
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.7e-40 170.6 277 45.5
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 2.4e-39 166.8 278 53.2
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 4.1e-39 166.0 279 45.2
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 5.4e-39 165.6 161 68.3
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 6.0e-38 162.2 282 50.4
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.3e-37 161.0 280 43.9
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 1.5e-36 157.5 107 69.2
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.5e-36 156.8 247 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.8e-35 153.3 282 42.2
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 3.1e-34 149.8 278 34.5
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.2e-33 147.9 206 53.9
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 3.0e-29 133.3 213 49.8
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 5.1e-29 132.5 143 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 5.6e-28 129.0 190 40.0
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.6e-27 127.5 77 71.4
C03p32520 Brassica napus HOM05D000416 ORTHO05D000322 2.1e-27 127.1 173 57.2
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 6.2e-27 125.6 279 44.4
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 1.4e-26 124.4 162 42.6
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 5.2e-26 122.5 293 35.2
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 9.0e-26 121.7 279 47.7
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 3.4e-25 119.8 97 61.9
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 5.8e-25 119.0 289 37.0
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 8.4e-24 115.2 205 52.2
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 3.2e-23 113.2 283 43.5
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 5.4e-23 112.5 289 36.0
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 7.1e-23 112.1 323 35.0
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 2.7e-22 110.2 205 55.6
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 1.4e-18 97.8 266 48.1
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.4e-18 97.1 76 64.5
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 5.3e-18 95.9 205 52.2
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.3e-13 81.3 102 48.0
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 3.9e-13 79.7 49 75.5
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.3e-12 76.3 108 62.0
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 5.6e-12 75.9 185 42.7
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 5.6e-12 75.9 134 49.3
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 9.6e-12 75.1 279 25.4
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 2.1e-11 73.9 50 72.0
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 8.1e-11 72.0 370 29.2
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 6.9e-10 68.9 80 45.0
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 2.6e-09 67.0 35 77.1
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 4.5e-09 66.2 225 45.3
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 1.4e-07 61.2 184 51.1
DCAR_020748 Daucus carota HOM05D004768 ORTHO05D005812 2.4e-07 60.5 155 30.3
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 4.6e-06 56.2 159 27.7
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 6.0e-06 55.8 43 58.1
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 6.0e-06 55.8 29 79.3


User provided reference genes

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