Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 2.9e-88 328.9 219 100.0
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 3.4e-81 305.4 218 94.0
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 7.6e-81 304.3 218 93.6
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.1e-79 300.4 218 92.7
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 9.9e-73 277.3 219 89.5
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 1.7e-72 276.6 221 86.0
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 3.8e-72 275.4 222 82.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 6.4e-72 274.6 219 85.8
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 6.4e-72 274.6 219 88.6
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 1.2e-70 270.4 219 86.8
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 9.0e-66 254.2 217 84.3
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 5.1e-61 238.4 165 84.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 6.7e-61 238.0 168 83.3
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 1.4e-50 203.8 224 66.5
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 6.9e-50 201.4 222 64.4
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.4e-49 199.1 227 66.1
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 7.7e-49 198.0 227 66.5
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.3e-48 197.2 226 68.1
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 3.8e-48 195.7 224 65.2
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 5.0e-48 195.3 229 62.9
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 5.0e-48 195.3 223 64.6
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 8.5e-48 194.5 225 61.3
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.4e-47 193.7 222 68.0
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 1.9e-47 193.4 224 66.1
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 2.5e-47 193.0 225 65.8
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 5.5e-47 191.8 219 63.9
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 4.6e-46 188.7 217 64.5
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 6.1e-46 188.3 227 67.0
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 7.9e-46 188.0 223 63.7
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 7.9e-46 188.0 226 66.8
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 1.0e-45 187.6 223 65.9
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 3.9e-45 185.7 217 64.5
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 3.9e-45 185.7 223 69.1
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 6.7e-45 184.9 223 65.9
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 6.7e-45 184.9 227 63.9
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.1e-44 184.1 226 65.0
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 1.1e-44 184.1 226 65.0
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.1e-44 184.1 226 65.0
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.5e-44 183.7 217 64.1
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 2.0e-44 183.3 222 67.6
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 2.6e-44 183.0 221 62.0
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 5.7e-44 181.8 218 62.4
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.3e-43 180.6 219 68.5
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 1.3e-43 180.6 220 64.5
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 2.2e-43 179.9 222 62.6
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 2.2e-43 179.9 159 78.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 2.8e-43 179.5 220 66.4
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 2.8e-43 179.5 224 65.2
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 2.8e-43 179.5 220 64.1
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 3.7e-43 179.1 220 65.0
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 4.8e-43 178.7 226 64.2
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 4.8e-43 178.7 223 65.9
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.1e-42 177.6 216 62.5
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 1.4e-42 177.2 223 63.2
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 1.8e-42 176.8 221 64.7
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 2.4e-42 176.4 174 71.8
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 2.4e-42 176.4 219 66.2
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 5.3e-42 175.3 222 64.9
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.5e-41 173.7 222 64.4
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.5e-41 173.7 217 61.3
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 1.5e-41 173.7 227 64.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 2.0e-41 173.3 221 65.6
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 2.6e-41 172.9 223 60.1
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 3.4e-41 172.6 218 63.3
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 5.9e-41 171.8 219 65.3
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 5.9e-41 171.8 157 76.4
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.0e-40 171.0 214 65.0
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.2e-40 169.9 222 62.6
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 3.8e-40 169.1 217 65.4
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.4e-39 167.2 215 61.9
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 4.2e-39 165.6 168 72.0
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 7.2e-39 164.9 220 60.0
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.6e-38 163.7 143 64.3
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 2.1e-38 163.3 225 51.1
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 6.1e-38 161.8 216 59.7
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 1.8e-37 160.2 213 60.1
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.1e-36 157.5 226 60.6
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 1.5e-36 157.1 223 59.2
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 3.3e-36 156.0 221 61.1
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 3.3e-36 156.0 223 58.7
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 9.7e-36 154.5 217 60.8
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 9.7e-36 154.5 217 62.7
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 8.2e-35 151.4 183 61.7
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 4.5e-33 145.6 162 71.0
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 2.9e-32 142.9 127 74.0
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 2.9e-32 142.9 206 60.7
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 9.4e-31 137.9 149 72.5
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 9.7e-28 127.9 126 76.2
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 2.2e-27 126.7 216 53.2
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 2.7e-25 119.8 105 80.0
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.3e-24 117.5 227 52.0
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 1.1e-23 114.4 167 59.3
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 2.5e-23 113.2 105 82.9
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 9.4e-23 111.3 150 62.7
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 2.7e-22 109.8 214 44.9
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 3.6e-22 109.4 181 54.7
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 4.7e-22 109.0 105 81.0
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.0e-21 105.9 76 72.4
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 7.5e-20 101.7 88 60.2
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.4e-18 96.7 105 77.1
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.7e-16 90.5 145 42.1
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 2.9e-16 89.7 108 49.1
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 1.1e-15 87.8 182 30.2
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.1e-15 87.8 130 43.8
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 1.9e-15 87.0 191 47.6
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.2e-15 85.9 186 46.8
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 8.8e-13 78.2 60 63.3
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.2e-12 77.8 133 42.9
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.6e-12 76.6 91 41.8
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 6.3e-11 72.0 82 53.7
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 1.4e-10 70.9 108 43.5
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 4.7e-06 55.8 104 46.2


User provided reference genes

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