Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 6.6e-67 257.3 135 100.0
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 2.2e-54 215.7 136 86.0
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.9e-54 214.5 136 86.0
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.9e-50 202.6 138 80.4
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 2.5e-50 202.2 142 78.2
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 8.1e-49 197.2 135 78.5
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 8.1e-49 197.2 135 78.5
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 4.0e-48 194.9 132 81.1
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 5.2e-48 194.5 139 79.1
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 3.4e-47 191.8 135 77.0
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.3e-46 189.9 135 77.8
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.3e-46 189.9 135 77.8
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.5e-44 181.8 136 75.0
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.5e-44 181.8 136 75.0
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 4.6e-44 181.4 137 74.5
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 6.0e-44 181.0 136 75.0
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.3e-43 179.9 135 74.8
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 5.6e-42 174.5 141 68.8
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 1.2e-28 130.2 136 58.1
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.4e-24 116.7 119 53.8
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 1.8e-24 116.3 137 51.8
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 1.4e-21 106.7 135 47.4
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 4.6e-20 101.7 100 55.0
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 2.3e-19 99.4 132 48.5
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 3.0e-19 99.0 90 57.8
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 3.0e-19 99.0 90 57.8
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 3.9e-19 98.6 96 55.2
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 5.1e-19 98.2 91 57.1
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 5.1e-19 98.2 95 54.7
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 6.7e-19 97.8 142 44.4
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.5e-18 96.7 99 53.5
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 1.9e-18 96.3 138 45.7
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 2.5e-18 95.9 92 57.6
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 3.3e-18 95.5 127 44.1
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 5.6e-18 94.7 127 45.7
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.3e-17 93.6 138 48.6
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.1e-17 92.8 133 48.1
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 2.8e-17 92.4 93 52.7
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 3.6e-17 92.0 127 47.2
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 6.2e-17 91.3 137 44.5
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 8.1e-17 90.9 92 54.3
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 8.1e-17 90.9 92 54.3
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 8.1e-17 90.9 92 53.3
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 8.1e-17 90.9 137 45.3
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 1.1e-16 90.5 122 48.4
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.4e-16 90.1 119 45.4
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 2.4e-16 89.4 117 49.6
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 6.9e-16 87.8 107 48.6
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 6.9e-16 87.8 92 47.8
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 9.0e-16 87.4 114 46.5
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.0e-15 86.3 92 47.8
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 3.4e-15 85.5 89 52.8
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 3.4e-15 85.5 128 42.2
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 4.5e-15 85.1 97 47.4
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 5.8e-15 84.7 100 47.0
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 7.6e-15 84.3 98 48.0
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 2.2e-14 82.8 96 46.9
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 2.2e-14 82.8 142 40.8
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 4.9e-14 81.6 136 42.6
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 4.9e-14 81.6 118 44.1
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 8.4e-14 80.9 93 49.5
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 1.9e-13 79.7 127 44.1
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 2.4e-13 79.3 83 54.2
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 2.4e-13 79.3 133 39.8
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 3.2e-13 79.0 141 39.0
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 4.2e-13 78.6 116 43.1
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 4.2e-13 78.6 132 37.1
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 4.2e-13 78.6 139 41.7
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 7.1e-13 77.8 95 44.2
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 7.1e-13 77.8 128 40.6
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 7.1e-13 77.8 90 48.9
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.2e-12 77.0 88 51.1
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 1.6e-12 76.6 126 42.1
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 2.1e-12 76.3 86 51.2
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 2.7e-12 75.9 107 44.9
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 4.6e-12 75.1 91 49.5
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 4.6e-12 75.1 83 49.4
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 4.6e-12 75.1 126 38.9
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 4.6e-12 75.1 127 39.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 4.6e-12 75.1 97 44.3
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 4.6e-12 75.1 97 44.3
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.9e-12 74.3 100 46.0
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 1.0e-11 73.9 95 44.2
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 8.7e-11 70.9 86 44.2
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 1.1e-10 70.5 93 44.1
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 1.5e-10 70.1 101 39.6
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 3.3e-10 68.9 96 42.7
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 3.3e-10 68.9 132 35.6
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 7.4e-10 67.8 85 51.8
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 9.6e-10 67.4 89 43.8
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 2.1e-09 66.2 100 41.0
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 3.7e-09 65.5 74 50.0
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 4.8e-09 65.1 86 47.7
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.4e-08 62.8 109 42.2
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.0e-08 62.0 58 50.0
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 9.0e-08 60.8 94 39.4
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 1.5e-07 60.1 92 42.4
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.5e-07 60.1 65 52.3
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 1.5e-07 60.1 51 58.8
BcaB03g12705 Brassica carinata HOM05D007435 ORTHO05D009338 2.6e-07 59.3 40 75.0


User provided reference genes

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