Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 1.0e-71 273.5 159 100.0
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 4.4e-54 214.9 169 72.8
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 4.1e-52 208.4 166 71.7
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.3e-50 203.4 161 75.8
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 1.9e-49 199.5 161 72.0
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 1.9e-49 199.5 161 72.0
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 1.9e-49 199.5 161 72.0
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 2.1e-48 196.1 170 74.7
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 1.0e-47 193.7 162 75.3
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 3.1e-47 192.2 162 72.2
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 3.6e-40 168.7 162 70.4
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 2.2e-37 159.5 160 58.8
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 1.7e-34 149.8 169 58.0
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 2.9e-29 132.5 181 54.1
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 8.4e-29 131.0 182 56.0
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 3.2e-28 129.0 118 62.7
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 1.0e-26 124.0 161 50.3
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 2.3e-26 122.9 176 47.2
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 6.6e-26 121.3 184 53.8
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 8.6e-26 120.9 166 54.8
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 1.5e-25 120.2 160 50.0
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 1.9e-25 119.8 155 48.4
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 8.1e-24 114.4 164 51.2
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 8.1e-24 114.4 163 54.0
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 8.1e-24 114.4 163 54.0
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 8.1e-24 114.4 65 81.5
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 1.4e-23 113.6 69 78.3
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 1.8e-23 113.2 184 46.2
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 4.0e-23 112.1 166 53.6
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 4.0e-23 112.1 166 53.6
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 5.2e-23 111.7 68 79.4
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 5.2e-23 111.7 64 79.7
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 6.8e-23 111.3 165 46.1
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 6.8e-23 111.3 76 72.4
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 8.9e-23 110.9 198 44.4
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 8.9e-23 110.9 67 77.6
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 8.9e-23 110.9 160 49.4
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 1.2e-22 110.5 70 72.9
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.2e-22 110.5 173 48.0
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.5e-22 110.2 179 48.0
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 1.5e-22 110.2 160 49.4
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 2.0e-22 109.8 165 52.7
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 2.0e-22 109.8 68 83.8
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 2.0e-22 109.8 76 71.1
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 2.6e-22 109.4 64 76.6
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 3.4e-22 109.0 64 78.1
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 4.4e-22 108.6 174 48.9
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 7.6e-22 107.8 160 47.5
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 7.6e-22 107.8 169 52.7
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 9.9e-22 107.5 165 45.5
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 9.9e-22 107.5 64 76.6
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 2.9e-21 105.9 106 54.7
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 2.9e-21 105.9 160 50.6
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 3.8e-21 105.5 138 49.3
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 4.9e-21 105.1 170 44.1
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 1.1e-20 104.0 199 43.7
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 1.1e-20 104.0 71 67.6
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 1.1e-20 104.0 71 67.6
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 1.4e-20 103.6 74 68.9
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.4e-20 103.6 163 54.0
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 2.4e-20 102.8 162 42.0
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 4.2e-20 102.1 178 40.4
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 5.4e-20 101.7 135 48.1
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 7.1e-20 101.3 160 41.9
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 7.1e-20 101.3 160 41.9
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 7.1e-20 101.3 64 71.9
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 9.3e-20 100.9 161 42.9
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 9.3e-20 100.9 70 70.0
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 9.3e-20 100.9 71 67.6
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 1.2e-19 100.5 191 43.5
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 1.2e-19 100.5 57 75.4
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 1.2e-19 100.5 171 50.9
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 1.6e-19 100.1 63 82.5
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 2.7e-19 99.4 66 72.7
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 3.5e-19 99.0 162 40.7
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 3.5e-19 99.0 162 42.0
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 3.5e-19 99.0 71 69.0
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 6.0e-19 98.2 163 44.8
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 6.0e-19 98.2 171 46.2
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 7.8e-19 97.8 160 40.0
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 1.0e-18 97.4 73 65.8
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 1.0e-18 97.4 161 42.2
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 1.0e-18 97.4 118 49.2
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 1.3e-18 97.1 64 75.0
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 1.7e-18 96.7 127 52.8
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 1.7e-18 96.7 55 78.2
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 1.7e-18 96.7 163 47.9
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 2.3e-18 96.3 160 45.0
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 3.0e-18 95.9 68 66.2
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 8.7e-18 94.4 165 46.7
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 8.7e-18 94.4 67 62.7
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 1.1e-17 94.0 168 42.3
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 1.1e-17 94.0 162 40.1
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 1.5e-17 93.6 161 41.0
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 1.5e-17 93.6 165 45.5
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 1.5e-17 93.6 73 64.4
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 1.5e-17 93.6 59 71.2
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 1.5e-17 93.6 164 44.5
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 1.9e-17 93.2 155 41.9
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 2.5e-17 92.8 165 46.1
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.5e-17 92.8 165 46.1
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 2.5e-17 92.8 59 71.2
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 4.3e-17 92.0 161 39.1
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 7.3e-17 91.3 76 60.5
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 2.1e-16 89.7 142 41.5
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 2.1e-16 89.7 176 37.5
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 2.8e-16 89.4 151 40.4
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 6.2e-16 88.2 63 57.1
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 6.2e-16 88.2 121 44.6
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 1.1e-15 87.4 170 42.9
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 1.8e-15 86.7 86 57.0
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 1.8e-15 86.7 57 68.4
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 1.8e-15 86.7 162 38.9
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 3.1e-15 85.9 162 37.7
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 4.0e-15 85.5 59 64.4
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 6.9e-15 84.7 200 38.5
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 1.2e-14 84.0 70 60.0
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 1.2e-14 84.0 160 40.0
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 2.0e-14 83.2 64 60.9
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 7.6e-14 81.3 160 33.8
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 2.2e-13 79.7 60 58.3
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 4.9e-13 78.6 57 56.1
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 1.1e-12 77.4 156 36.5
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 1.9e-12 76.6 65 61.5
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 4.2e-12 75.5 53 56.6
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.6e-11 73.6 64 50.0
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 2.7e-11 72.8 162 35.2
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 4.8e-08 62.0 37 73.0
ATR0580G376 Amborella trichopoda HOM05D005678 ORTHO05D006894 1.8e-07 60.1 66 47.0
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 1.8e-07 60.1 61 50.8
Haze_20337 Corylus avellana HOM05D005678 ORTHO05D006894 4.0e-07 58.9 34 73.5
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 9.0e-07 57.8 43 51.2


User provided reference genes

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